UHGV-0019359

Genome information

Genome length 42,002 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019359
vOTU ID	vOTU-043115
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_K_12_1156__NODE_1269_length_42079_cov_35.246274
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.34
Jumbo phage	No

Genome content
Genome length	42,002 bps
GC content	42.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	93.81%
Average CDS length	552.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019359_4	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0019359_4	eggNOG-mapper	1131462.DCF50_p1798	NA	NA
UHGV-0019359_5	PHROG	phrog_4105	NA	unknown function
UHGV-0019359_5	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0019359_5	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0019359_6	PHROG	phrog_443	holin	lysis
UHGV-0019359_6	UniRef90	UniRef90_A0A1I1Y2T2	Phage r1t holin	NA
UHGV-0019359_6	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0019359_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0019359_6	Structural annotation	PF16945	NA	NA
UHGV-0019359_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0019359_7	PHROG	phrog_435	endolysin	lysis
UHGV-0019359_7	UniRef90	UniRef90_B0MAM2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019359_7	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0019359_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0019359_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019359_7	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0019359_8	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0019359_9	PHROG	phrog_21718	NA	unknown function
UHGV-0019359_9	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0019359_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0019359_13	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0019359_14	KOfam	K14059	int; integrase	NA
UHGV-0019359_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0019359_14	UniRef90	UniRef90_A0A858BPV1	Site-specific integrase	NA
UHGV-0019359_14	eggNOG-mapper	397290.C810_00805	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0019359_14	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0019359_14	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0019359_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019359_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019359_14	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0019359_15	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0019359_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019359_17	UniRef90	UniRef90_UPI000BA57F70	helix-turn-helix transcriptional regulator	NA
UHGV-0019359_17	eggNOG-mapper	1285586.H131_11663	Helix-turn-helix XRE-family like proteins	NA
UHGV-0019359_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019359_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019359_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0019359_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019359_22	PHROG	phrog_989	NA	unknown function
UHGV-0019359_22	UniRef90	UniRef90_A0A7V7UB01	Helix-turn-helix domain-containing protein	NA
UHGV-0019359_22	eggNOG-mapper	1540257.JQMW01000013_gene708	NA	NA
UHGV-0019359_23	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0019359_23	PHROG	phrog_19349	NA	unknown function
UHGV-0019359_23	UniRef90	UniRef90_UPI000DE563D6	transglycosylase SLT domain-containing protein	NA
UHGV-0019359_23	eggNOG-mapper	1120746.CCNL01000011_gene1661	lytic transglycosylase activity	NA
UHGV-0019359_23	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0019359_23	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0019359_23	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0019359_26	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0019359_26	UniRef90	UniRef90_A0A174X4J3	Phage replication initiation protein	NA
UHGV-0019359_26	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0019359_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019359_26	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0019359_27	PHROG	phrog_9804	NA	unknown function
UHGV-0019359_27	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-0019359_27	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0019359_27	AcrCatalog	cluster_137185	NA	NA
UHGV-0019359_27	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0019359_27	Structural annotation	PF11417	NA	NA
UHGV-0019359_28	PHROG	phrog_2113	NA	unknown function
UHGV-0019359_30	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0019359_30	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0019359_30	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0019359_30	Pfam	PF04404	ERF superfamily	ERF
UHGV-0019359_30	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0019359_31	PHROG	phrog_674	NA	unknown function
UHGV-0019359_31	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0019359_31	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0019359_31	Pfam	PF07083	NA	DUF1351
UHGV-0019359_31	Structural annotation	PF07083	NA	NA
UHGV-0019359_32	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019359_32	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0019359_32	eggNOG-mapper	358681.BBR47_35660	HNH endonuclease	NA
UHGV-0019359_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0019359_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0019359_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0019359_33	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0019359_33	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0019359_33	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0019359_35	PHROG	phrog_25385	NA	unknown function
UHGV-0019359_35	eggNOG-mapper	718252.FP2_16450	NA	NA
UHGV-0019359_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019359_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019359_36	UniRef90	UniRef90_A0A645FRU2	Single-stranded DNA-binding protein	NA
UHGV-0019359_36	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-0019359_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019359_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019359_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019359_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019359_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0019359_40	PHROG	phrog_21026	NA	unknown function
UHGV-0019359_40	Structural annotation	NF037951	NA	NA
UHGV-0019359_41	PHROG	phrog_21026	NA	unknown function
UHGV-0019359_45	PHROG	phrog_20593	NA	unknown function
UHGV-0019359_45	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0019359_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0019359_48	PHROG	phrog_10714	NA	unknown function
UHGV-0019359_49	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019359_49	UniRef90	UniRef90_A0A7V9HWC2	Crossover junction endodeoxyribonuclease	NA
UHGV-0019359_49	eggNOG-mapper	1115515.EV102420_06_00190	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0019359_49	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0019359_49	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0019359_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0019359_51	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0019359_52	UniRef90	UniRef90_W1I7V7	Uncultured bacterium plasmid pRGF00143	NA
UHGV-0019359_54	Structural annotation	PF09392	NA	NA
UHGV-0019359_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0019359_57	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0019359_57	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0019359_57	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0019359_57	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0019359_57	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0019359_57	COG	COG5362	Phage terminase large subunit	NA
UHGV-0019359_57	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0019359_59	PHROG	phrog_156	portal protein	head and packaging
UHGV-0019359_59	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0019359_59	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0019359_61	PHROG	phrog_267	major head protein	head and packaging
UHGV-0019359_61	UniRef90	UniRef90_A0A4R3KBP0	N4-gp56 family major capsid protein	NA
UHGV-0019359_61	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0019359_61	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019359_62	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0019359_64	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0019359_64	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0019359_64	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0019359_65	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0019359_66	PHROG	phrog_2824	virion structural protein	head and packaging
UHGV-0019359_66	UniRef90	UniRef90_A0A1C6GKY2	Mtd_N domain-containing protein	NA
UHGV-0019359_66	eggNOG-mapper	696281.Desru_3489	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0019359_66	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0019359_66	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0019359_66	Structural annotation	PF18454	NA	NA
UHGV-0019359_67	eggNOG-mapper	768710.DesyoDRAFT_5195	NA	NA
UHGV-0019359_67	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0019359_68	PHROG	phrog_37900	NA	unknown function
UHGV-0019359_68	UniRef90	UniRef90_A0A2V2GNJ9	NA	NA
UHGV-0019359_68	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0019359_68	Pfam	PF19789	NA	DUF6273
UHGV-0019359_68	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0019359_68	Structural annotation	PF19789	NA	NA
UHGV-0019359_70	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0019359_70	Structural annotation	NF040910	NA	NA