UHGV-0019614

Genome information

Genome length 23,472 bps

CDS count 29

Completeness 58.17% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019614
vOTU ID	vOTU-022349
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_24_2201__NODE_2809_length_23472_cov_7.431631
BioSample	SAMEA4766190
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.06
Jumbo phage	No

Genome content
Genome length	23,472 bps
GC content	43.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.18%
Average CDS length	749.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019614_1	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-0019614_2	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0019614_2	eggNOG-mapper	411483.FAEPRAA2165_02721	COG NOG12663 non supervised orthologous group	NA
UHGV-0019614_2	Structural annotation	PF12261, MF_02210, NF040502, COG1247	NA	NA
UHGV-0019614_3	PHROG	phrog_8684	NA	unknown function
UHGV-0019614_3	UniRef90	UniRef90_R0BRM0	YopX domain-containing protein	NA
UHGV-0019614_3	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0019614_3	Pfam	PF09643	YopX protein	YopX
UHGV-0019614_3	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0019614_3	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0019614_9	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0019614_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0019614_10	UniRef90	UniRef90_A0A847J4Z6	NA	NA
UHGV-0019614_10	eggNOG-mapper	203119.Cthe_1732	sigma factor activity	NA
UHGV-0019614_10	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0019614_10	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0019614_11	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0019614_11	UniRef90	UniRef90_A0A7X5R6H1	Helix-turn-helix domain-containing protein	NA
UHGV-0019614_11	eggNOG-mapper	1140002.I570_01447	Helix-turn-helix of insertion element transposase	NA
UHGV-0019614_11	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0019614_11	Structural annotation	PF13022	NA	NA
UHGV-0019614_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0019614_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0019614_12	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-0019614_12	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0019614_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0019614_12	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0019614_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0019614_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0019614_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0019614_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0019614_13	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-0019614_13	eggNOG-mapper	1121947.AUHK01000002_gene930	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0019614_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0019614_13	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0019614_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0019614_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0019614_14	UniRef90	UniRef90_UPI0005A7EC33	HK97 gp10 family phage protein	NA
UHGV-0019614_14	eggNOG-mapper	46256.BBIK01000004_gene696	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0019614_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0019614_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0019614_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0019614_15	UniRef90	UniRef90_A0A416MNN9	Phage head morphogenesis protein	NA
UHGV-0019614_15	eggNOG-mapper	1499683.CCFF01000014_gene3913	Phage Mu protein F like protein	NA
UHGV-0019614_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0019614_15	Pfam	PF21814	NA	DUF6883
UHGV-0019614_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0019614_15	COG	COG2369	NA	NA
UHGV-0019614_15	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0019614_16	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0019614_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0019614_17	UniRef90	UniRef90_UPI00189A8A5B	NA	NA
UHGV-0019614_17	eggNOG-mapper	1260356.D920_01737	NA	NA
UHGV-0019614_17	Pfam	PF14265	NA	DUF4355
UHGV-0019614_17	Structural annotation	PF14265	NA	NA
UHGV-0019614_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0019614_18	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0019614_18	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0019614_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019614_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0019614_20	eggNOG-mapper	1226322.HMPREF1545_04047	NA	NA
UHGV-0019614_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0019614_20	Structural annotation	PF05135	NA	NA
UHGV-0019614_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0019614_22	PHROG	phrog_78	tail terminator	connector
UHGV-0019614_22	eggNOG-mapper	1124578.H0USX0_9CAUD	NA	NA
UHGV-0019614_22	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0019614_23	PHROG	phrog_88	major tail protein	tail
UHGV-0019614_23	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0019614_23	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-0019614_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0019614_23	COG	COG5276	NA	NA
UHGV-0019614_23	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0019614_25	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0019614_25	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0019614_25	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0019614_25	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-0019614_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0019614_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0019614_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0019614_25	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0019614_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0019614_26	UniRef90	UniRef90_R6MJ66	Phage-related protein	NA
UHGV-0019614_26	eggNOG-mapper	349161.Dred_2597	Phage tail protein	NA
UHGV-0019614_26	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0019614_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-0019614_26	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0019614_27	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0019614_27	UniRef90	UniRef90_R6NDU9	Phage minor structural protein	NA
UHGV-0019614_27	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0019614_27	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0019614_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0019614_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0019614_27	COG	COG4926	Phage-related protein	NA
UHGV-0019614_29	PHROG	phrog_25468	NA	unknown function
UHGV-0019614_29	eggNOG-mapper	1163671.JAGI01000002_gene1216	Phage Tail Collar Domain	NA
UHGV-0019614_29	COG	COG4675	Phage tail collar domain	NA