UHGV-0019640

Genome information

Genome length 39,650 bps

CDS count 73

Completeness 99.90% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019640
vOTU ID	vOTU-077700
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_K_14_1158__NODE_1811_length_39650_cov_29.416067
BioSample	SAMEA4765618
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.87
Jumbo phage	No

Genome content
Genome length	39,650 bps
GC content	55.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	93.32%
Average CDS length	511.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019640_2	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0019640_2	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0019640_2	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0019640_2	Structural annotation	PF10771, NF041413, COG0735	NA	NA
UHGV-0019640_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019640_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019640_3	UniRef90	UniRef90_A0A1C5PRE8	Single-stranded DNA-binding protein	NA
UHGV-0019640_3	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0019640_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019640_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019640_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019640_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019640_3	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0019640_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0019640_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0019640_4	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0019640_4	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0019640_4	Pfam	PF03837	RecT family	RecT
UHGV-0019640_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0019640_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0019640_4	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0019640_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019640_5	UniRef90	UniRef90_A0A1Y3S9B9	YqaJ domain-containing protein	NA
UHGV-0019640_5	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0019640_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0019640_5	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0019640_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0019640_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0019640_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0019640_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019640_7	eggNOG-mapper	931276.Cspa_c07460	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0019640_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019640_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019640_10	PHROG	phrog_5781	NA	unknown function
UHGV-0019640_10	UniRef90	UniRef90_R5AT00	Gp57	NA
UHGV-0019640_10	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0019640_10	Pfam	PF14359	NA	DUF4406
UHGV-0019640_10	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0019640_10	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0019640_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0019640_18	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0019640_18	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0019640_18	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0019640_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019640_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019640_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0019640_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019640_21	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0019640_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0019640_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0019640_22	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-0019640_22	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0019640_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0019640_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-0019640_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0019640_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0019640_22	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0019640_24	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0019640_24	Pfam	PF08681	NA	DUF1778
UHGV-0019640_24	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0019640_25	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0019640_26	Structural annotation	PF12510	NA	NA
UHGV-0019640_27	PHROG	phrog_20016	NA	unknown function
UHGV-0019640_27	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0019640_27	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0019640_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0019640_28	PHROG	phrog_16490	NA	unknown function
UHGV-0019640_28	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0019640_29	PHROG	phrog_22984	NA	unknown function
UHGV-0019640_30	PHROG	phrog_21718	NA	unknown function
UHGV-0019640_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0019640_31	PHROG	phrog_3754	NA	unknown function
UHGV-0019640_31	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0019640_32	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0019640_34	PHROG	phrog_1129	holin	lysis
UHGV-0019640_34	UniRef90	UniRef90_A0A3D4QXE9	Enolase	NA
UHGV-0019640_34	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0019640_34	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0019640_34	Structural annotation	PF06946	NA	NA
UHGV-0019640_35	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0019640_36	KOfam	K07273	acm; lysozyme	NA
UHGV-0019640_36	PHROG	phrog_291	endolysin	lysis
UHGV-0019640_36	UniRef90	UniRef90_A0A3F3PBL6	LysM domain-containing protein	NA
UHGV-0019640_36	eggNOG-mapper	1125712.HMPREF1316_2132	CW_7 repeat	NA
UHGV-0019640_36	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0019640_36	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0019640_36	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0019640_36	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0019640_38	PHROG	phrog_9534	head protein	head and packaging
UHGV-0019640_38	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0019640_38	Structural annotation	PF13157	NA	NA
UHGV-0019640_39	PHROG	phrog_538	minor tail protein	tail
UHGV-0019640_39	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0019640_39	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0019640_39	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0019640_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0019640_40	PHROG	phrog_36410	NA	unknown function
UHGV-0019640_40	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0019640_40	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0019640_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0019640_40	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0019640_41	PHROG	phrog_23464	NA	unknown function
UHGV-0019640_41	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0019640_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0019640_41	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0019640_43	PHROG	phrog_885	major tail protein	tail
UHGV-0019640_43	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0019640_43	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0019640_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0019640_44	Structural annotation	PF11367	NA	NA
UHGV-0019640_45	PHROG	phrog_17977	NA	unknown function
UHGV-0019640_45	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0019640_45	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0019640_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0019640_47	PHROG	phrog_544	major head protein	head and packaging
UHGV-0019640_47	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0019640_47	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0019640_47	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0019640_47	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019640_48	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0019640_48	Structural annotation	PF06810	NA	NA
UHGV-0019640_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0019640_49	UniRef90	UniRef90_UPI000691EB78	HK97 gp10 family phage protein	NA
UHGV-0019640_49	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0019640_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0019640_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0019640_50	Structural annotation	PF06442, MF_01194, NF000331, COG5475	NA	NA
UHGV-0019640_51	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0019640_51	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0019640_51	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0019640_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0019640_51	COG	COG2369	NA	NA
UHGV-0019640_51	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0019640_52	PHROG	phrog_64	portal protein	head and packaging
UHGV-0019640_52	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0019640_52	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0019640_52	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0019640_52	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0019640_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0019640_53	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0019640_53	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0019640_53	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0019640_55	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0019640_55	PHROG	phrog_21498	NA	unknown function
UHGV-0019640_55	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0019640_55	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0019640_55	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0019640_55	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0019640_55	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0019640_55	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0019640_56	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0019640_56	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0019640_56	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0019640_56	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0019640_58	Structural annotation	MF_00839	NA	NA
UHGV-0019640_64	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0019640_65	PHROG	phrog_60	NA	unknown function
UHGV-0019640_65	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0019640_65	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0019640_65	Pfam	PF04448	NA	DUF551
UHGV-0019640_65	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0019640_66	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0019640_66	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0019640_66	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0019640_67	PHROG	phrog_10714	NA	unknown function
UHGV-0019640_68	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019640_68	UniRef90	UniRef90_UPI0006D56AE3	AP2 domain-containing protein	NA
UHGV-0019640_68	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0019640_68	Structural annotation	PF17375	NA	NA
UHGV-0019640_69	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019640_69	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-0019640_69	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0019640_69	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0019640_69	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0019640_70	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0019640_70	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0019640_70	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0019640_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0019640_70	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0019640_72	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA