UHGV-0019721

Genome information

vOTU vOTU-019836

Genome length 35,822 bps

CDS count 46

Completeness 85.58% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019721
vOTU ID	vOTU-019836
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_21_1706__NODE_1928_length_35822_cov_13.857658
BioSample	SAMEA4765986
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.12
Jumbo phage	No

Genome content
Genome length	35,822 bps
GC content	58.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.23%
Average CDS length	738.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019721_1	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0019721_1	PHROG	phrog_819	tail protein	tail
UHGV-0019721_1	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0019721_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0019721_1	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0019721_2	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0019721_3	PHROG	phrog_22978	NA	unknown function
UHGV-0019721_3	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0019721_3	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0019721_3	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0019721_3	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0019721_4	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0019721_4	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0019721_5	PHROG	phrog_12105	NA	unknown function
UHGV-0019721_5	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0019721_7	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0019721_7	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0019721_7	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0019721_7	Pfam	PF13252	NA	DUF4043
UHGV-0019721_7	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0019721_7	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019721_8	PHROG	phrog_13908	NA	unknown function
UHGV-0019721_8	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0019721_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0019721_9	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0019721_9	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0019721_11	PHROG	phrog_37329	NA	unknown function
UHGV-0019721_11	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0019721_11	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0019721_11	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0019721_12	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0019721_13	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0019721_13	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0019721_13	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0019721_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0019721_14	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0019721_14	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0019721_14	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0019721_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0019721_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0019721_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0019721_15	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0019721_15	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0019721_15	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0019721_15	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0019721_15	Structural annotation	PF16677	NA	NA
UHGV-0019721_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0019721_16	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0019721_16	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0019721_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0019721_17	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0019721_17	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0019721_17	Structural annotation	PF08271	NA	NA
UHGV-0019721_19	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019721_19	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-0019721_21	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019721_21	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0019721_21	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0019721_21	Pfam	PF06356	NA	DUF1064
UHGV-0019721_21	Structural annotation	PF06356	NA	NA
UHGV-0019721_24	PHROG	phrog_38832	NA	unknown function
UHGV-0019721_24	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0019721_25	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0019721_25	UniRef90	UniRef90_R5AT00	Gp57	NA
UHGV-0019721_25	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0019721_25	Pfam	PF14359	NA	DUF4406
UHGV-0019721_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0019721_25	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0019721_26	PHROG	phrog_3136	NA	unknown function
UHGV-0019721_26	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0019721_26	Pfam	PF04266	ASCH domain	ASCH
UHGV-0019721_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0019721_26	Structural annotation	PF12961, NF002008, COG4933	NA	NA
UHGV-0019721_29	eggNOG-mapper	1408324.JNJK01000014_gene1982	NA	NA
UHGV-0019721_32	Structural annotation	PF05082	NA	NA
UHGV-0019721_33	Structural annotation	NF041247	NA	NA
UHGV-0019721_35	Structural annotation	PF10548	NA	NA
UHGV-0019721_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0019721_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019721_40	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0019721_40	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0019721_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019721_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019721_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0019721_42	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0019721_42	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0019721_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019721_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0019721_44	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0019721_45	KOfam	K14059	int; integrase	NA
UHGV-0019721_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0019721_45	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0019721_45	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0019721_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0019721_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019721_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019721_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA