UHGV-0019807

Genome information

vOTU vOTU-019771

Genome length 41,405 bps

CDS count 64

Completeness 89.97% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019807
vOTU ID	vOTU-019771
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_18_1660__NODE_2081_length_41405_cov_6.281673
BioSample	SAMEA4765940
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.46
Jumbo phage	No

Genome content
Genome length	41,405 bps
GC content	41.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.95%
Average CDS length	605.95 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019807_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0019807_3	PHROG	phrog_16490	NA	unknown function
UHGV-0019807_3	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0019807_4	PHROG	phrog_21718	NA	unknown function
UHGV-0019807_5	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0019807_5	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0019807_6	UniRef90	UniRef90_A0A3A9ENR0	NlpC/P60 domain-containing protein	NA
UHGV-0019807_6	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0019807_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0019807_6	Structural annotation	PF01476, PF18342, PF00877, NF033743, NF041850, TIGR02899, COG0791, COG3807	NA	NA
UHGV-0019807_7	PHROG	phrog_962	holin	lysis
UHGV-0019807_7	UniRef90	UniRef90_UPI00085C48B3	phage holin	NA
UHGV-0019807_7	eggNOG-mapper	638301.HMPREF0444_1492	Holin, phage phi LC3 family	NA
UHGV-0019807_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0019807_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0019807_7	COG	COG5546	NA	NA
UHGV-0019807_7	Structural annotation	COG5546	NA	NA
UHGV-0019807_8	PHROG	phrog_1863	NA	unknown function
UHGV-0019807_8	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0019807_10	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0019807_10	Structural annotation	PF17005, MF_01282, NF000096, COG4257	NA	NA
UHGV-0019807_12	PHROG	phrog_372	tail protein	tail
UHGV-0019807_12	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0019807_12	eggNOG-mapper	883114.HMPREF9709_01181	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0019807_12	Pfam	PF05895	NA	DUF859
UHGV-0019807_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0019807_12	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0019807_13	PHROG	phrog_6616	tail protein	tail
UHGV-0019807_13	UniRef90	UniRef90_UPI001D03856C	pblB	NA
UHGV-0019807_13	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0019807_13	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0019807_14	PHROG	phrog_1194	NA	unknown function
UHGV-0019807_14	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0019807_14	eggNOG-mapper	562981.HMPREF0428_01810	NA	NA
UHGV-0019807_14	Pfam	PF20458	NA	DUF6711
UHGV-0019807_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0019807_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0019807_15	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0019807_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0019807_16	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0019807_17	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0019807_17	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0019807_17	Pfam	PF16478	NA	DUF5055
UHGV-0019807_17	Structural annotation	PF16478	NA	NA
UHGV-0019807_18	PHROG	phrog_158	major tail protein	tail
UHGV-0019807_18	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0019807_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0019807_19	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0019807_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0019807_20	UniRef90	UniRef90_UPI001D096349	HK97 gp10 family phage protein	NA
UHGV-0019807_20	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0019807_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0019807_21	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0019807_22	UniRef90	UniRef90_A0A3D4KY33	DNA-packaging protein	NA
UHGV-0019807_22	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0019807_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0019807_22	Structural annotation	TIGR01560	NA	NA
UHGV-0019807_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0019807_23	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0019807_23	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019807_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0019807_25	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0019807_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0019807_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0019807_25	COG	COG2369	NA	NA
UHGV-0019807_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0019807_26	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-0019807_26	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0019807_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0019807_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0019807_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0019807_27	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0019807_27	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0019807_27	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0019807_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0019807_27	COG	COG5410	NA	NA
UHGV-0019807_28	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0019807_28	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0019807_28	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0019807_28	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0019807_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0019807_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0019807_28	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0019807_29	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-0019807_35	UniRef90	UniRef90_A0A316NCX3	Immunoglobulin	NA
UHGV-0019807_35	eggNOG-mapper	1235797.C816_04036	NA	NA
UHGV-0019807_36	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0019807_36	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0019807_36	UniRef90	UniRef90_UPI001D08D333	phage/plasmid primase, P4 family	NA
UHGV-0019807_36	eggNOG-mapper	469596.HMPREF9488_01547	D5 N terminal like	NA
UHGV-0019807_36	PADLOC	drt-cluster192	DRT	DRT
UHGV-0019807_36	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0019807_36	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0019807_36	Pfam	PF19263	NA	DUF5906
UHGV-0019807_36	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0019807_36	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0019807_36	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0019807_36	Structural annotation	PF04735, MF_00974, MF_04000, NF005477, COG3378, COG0358	NA	NA
UHGV-0019807_39	UniRef90	UniRef90_A0A7X7CG71	Metallophos_2 domain-containing protein	NA
UHGV-0019807_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0019807_40	UniRef90	UniRef90_UPI0004802E43	NA	NA
UHGV-0019807_40	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0019807_40	Pfam	PF11753	NA	DUF3310
UHGV-0019807_40	Structural annotation	PF11753	NA	NA
UHGV-0019807_42	UniRef90	UniRef90_UPI001570CAF6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0019807_42	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0019807_42	Structural annotation	PF13058, MF_00745	NA	NA
UHGV-0019807_45	PHROG	phrog_2164	NA	unknown function
UHGV-0019807_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0019807_49	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0019807_49	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0019807_49	UniRef90	UniRef90_A0A845RJ44	DNA methyltransferase	NA
UHGV-0019807_49	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0019807_49	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0019807_49	Pfam	PF05063	MT-A70	MT-A70
UHGV-0019807_49	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0019807_49	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0019807_50	PHROG	phrog_22529	NA	unknown function
UHGV-0019807_50	eggNOG-mapper	1321782.HMPREF1986_01147	3D domain protein	NA
UHGV-0019807_50	Pfam	PF06725	3D domain	3D
UHGV-0019807_50	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0019807_50	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0019807_51	PHROG	phrog_4433	NA	unknown function
UHGV-0019807_51	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0019807_51	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0019807_53	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019807_53	UniRef90	UniRef90_UPI000C0691A8	VRR-NUC domain-containing protein	NA
UHGV-0019807_53	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0019807_53	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0019807_53	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0019807_54	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0019807_54	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0019807_54	UniRef90	UniRef90_UPI000C086EC1	DEAD/DEAH box helicase family protein	NA
UHGV-0019807_54	eggNOG-mapper	1423814.HMPREF0549_0145	Helicase C-terminal domain protein	NA
UHGV-0019807_54	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0019807_54	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0019807_54	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0019807_54	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0019807_54	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0019807_55	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019807_55	UniRef90	UniRef90_UPI001D0929DA	NA	NA
UHGV-0019807_55	eggNOG-mapper	1539298.JO41_12690	NA	NA
UHGV-0019807_55	Structural annotation	PF05037	NA	NA
UHGV-0019807_56	PHROG	phrog_36365	NA	unknown function
UHGV-0019807_57	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0019807_57	UniRef90	UniRef90_UPI001D097C08	ATP-binding protein	NA
UHGV-0019807_57	eggNOG-mapper	873448.STRPO_0255	Phage nucleotide-binding protein	NA
UHGV-0019807_57	Pfam	PF13479	AAA domain	AAA_24
UHGV-0019807_57	Structural annotation	PF13479, MF_00268, TIGR01618, COG2874	NA	NA
UHGV-0019807_58	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019807_58	UniRef90	UniRef90_A0A3D5PCL4	NA	NA
UHGV-0019807_58	eggNOG-mapper	887325.HMPREF0381_0097	NA	NA
UHGV-0019807_58	Pfam	PF12684	NA	DUF3799
UHGV-0019807_58	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0019807_58	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0019807_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019807_62	UniRef90	UniRef90_UPI000C7BE75B	helix-turn-helix transcriptional regulator	NA
UHGV-0019807_62	eggNOG-mapper	1123315.AUIP01000003_gene199	Helix-turn-helix XRE-family like proteins	NA
UHGV-0019807_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0019807_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019807_62	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0019807_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019807_63	UniRef90	UniRef90_UPI0013597860	helix-turn-helix domain-containing protein	NA
UHGV-0019807_63	eggNOG-mapper	1121935.AQXX01000096_gene2564	Helix-turn-helix domain	NA
UHGV-0019807_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019807_63	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0019807_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0019807_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0019807_64	UniRef90	UniRef90_UPI001B3C62A3	recombinase family protein	NA
UHGV-0019807_64	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0019807_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0019807_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-0019807_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0019807_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0019807_64	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA