UHGV-0020099

Genome information

Genome length 34,724 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0020099
vOTU ID	vOTU-043193
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_14_1634__NODE_508_length_34801_cov_5.350190
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.61
Jumbo phage	No

Genome content
Genome length	34,724 bps
GC content	65.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.85%
Average CDS length	599.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020099_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0020099_1	PHROG	phrog_971	endolysin	lysis
UHGV-0020099_1	UniRef90	UniRef90_A0A0V8RQD3	NlpC/P60 domain-containing protein	NA
UHGV-0020099_1	eggNOG-mapper	521393.JH806633_gene1285	tape measure	NA
UHGV-0020099_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0020099_1	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0020099_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0020099_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0020099_2	PHROG	phrog_30446	NA	unknown function
UHGV-0020099_2	Structural annotation	PF00629, PF06995, NF033675, TIGR01633, COG3499	NA	NA
UHGV-0020099_3	PHROG	phrog_1887	tail protein	tail
UHGV-0020099_3	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-0020099_3	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-0020099_3	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0020099_4	PHROG	phrog_32674	NA	unknown function
UHGV-0020099_4	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-0020099_5	PHROG	phrog_31345	NA	unknown function
UHGV-0020099_5	Structural annotation	PF15868, NF012201	NA	NA
UHGV-0020099_7	PHROG	phrog_21825	endolysin	lysis
UHGV-0020099_7	UniRef90	UniRef90_A0A0V8RPY9	Peptidase C51 domain-containing protein	NA
UHGV-0020099_7	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-0020099_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-0020099_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0020099_7	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0020099_8	eggNOG-mapper	525246.HMPREF0058_1258	NA	NA
UHGV-0020099_9	PHROG	phrog_15808	NA	unknown function
UHGV-0020099_9	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-0020099_10	PHROG	phrog_28842	NA	unknown function
UHGV-0020099_10	Structural annotation	PF08400, TIGR04134, COG3126	NA	NA
UHGV-0020099_11	PHROG	phrog_30808	NA	unknown function
UHGV-0020099_12	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0020099_12	PHROG	phrog_17803	phosphodiesterase	other
UHGV-0020099_12	UniRef90	UniRef90_UPI000660BBAC	glycerophosphodiester phosphodiesterase	NA
UHGV-0020099_12	eggNOG-mapper	888052.HMPREF9006_0953	glycerophosphoryl diester phosphodiesterase	NA
UHGV-0020099_12	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0020099_12	Structural annotation	PF03009, MF_02227, NF006989, COG0584	NA	NA
UHGV-0020099_13	KOfam	K14059	int; integrase	NA
UHGV-0020099_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0020099_13	UniRef90	UniRef90_X6PZB2	Site-specific recombinase, phage integrase family	NA
UHGV-0020099_13	eggNOG-mapper	883077.HMPREF9241_01717	Belongs to the 'phage' integrase family	NA
UHGV-0020099_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0020099_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020099_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020099_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0020099_14	eggNOG-mapper	151537.Q77JL4_9CAUD	NA	NA
UHGV-0020099_15	UniRef90	UniRef90_A0A0V8RQD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0020099_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0020099_17	UniRef90	UniRef90_A0A0V8RQF5	HTH_17 domain-containing protein	NA
UHGV-0020099_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0020099_21	eggNOG-mapper	1125718.HMPREF1318_2842	NA	NA
UHGV-0020099_21	Structural annotation	PF16397, NF033845	NA	NA
UHGV-0020099_22	Structural annotation	PF14282	NA	NA
UHGV-0020099_23	Structural annotation	PF21611, NF038178	NA	NA
UHGV-0020099_24	Structural annotation	NF004927	NA	NA
UHGV-0020099_25	UniRef90	UniRef90_X6PWR3	Putative lipoprotein	NA
UHGV-0020099_25	Structural annotation	PF08410	NA	NA
UHGV-0020099_27	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0020099_27	eggNOG-mapper	1566993.A0A1B1FBJ0_9CAUD	methyltransferase activity	NA
UHGV-0020099_28	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0020099_28	UniRef90	UniRef90_A0A0M9UKU7	DNA-cytosine methyltransferase	NA
UHGV-0020099_28	eggNOG-mapper	1566993.A0A1B1FBJ0_9CAUD	methyltransferase activity	NA
UHGV-0020099_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0020099_30	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020099_30	UniRef90	UniRef90_A0A117IC21	Gp64	NA
UHGV-0020099_30	eggNOG-mapper	1287475.HMPREF1650_04280	crossover junction endodeoxyribonuclease activity	NA
UHGV-0020099_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0020099_30	Structural annotation	NF007305, COG4570	NA	NA
UHGV-0020099_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020099_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020099_31	UniRef90	UniRef90_UPI0005539AA5	single-stranded DNA-binding protein	NA
UHGV-0020099_31	eggNOG-mapper	1105029.HMPREF1137_1957	Single-stranded DNA-binding protein	NA
UHGV-0020099_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020099_31	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0020099_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020099_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0020099_31	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0020099_33	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020099_33	UniRef90	UniRef90_A0A7H2BGE1	HNH endonuclease	NA
UHGV-0020099_33	eggNOG-mapper	1273125.Rrhod_1344	HNH endonuclease	NA
UHGV-0020099_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0020099_33	Structural annotation	PF20024	NA	NA
UHGV-0020099_35	PHROG	phrog_908	NA	unknown function
UHGV-0020099_35	UniRef90	UniRef90_A0A0V8RQH7	HTH merR-type domain-containing protein	NA
UHGV-0020099_35	eggNOG-mapper	1237500.ANBA01000028_gene4891	NA	NA
UHGV-0020099_35	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0020099_37	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0020099_37	UniRef90	UniRef90_A0A2W4J7S9	DNA primase	NA
UHGV-0020099_37	eggNOG-mapper	1352941.M877_28815	Phage plasmid primase, P4 family domain protein	NA
UHGV-0020099_37	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0020099_37	Structural annotation	PF09250	NA	NA
UHGV-0020099_38	PHROG	phrog_226	minor tail protein	tail
UHGV-0020099_38	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-0020099_38	eggNOG-mapper	1121353.H924_07235	NA	NA
UHGV-0020099_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0020099_39	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-0020099_39	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-0020099_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0020099_39	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0020099_40	PHROG	phrog_104	portal protein	head and packaging
UHGV-0020099_40	UniRef90	UniRef90_UPI001C66A0B7	phage portal protein	NA
UHGV-0020099_40	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-0020099_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0020099_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0020099_41	eggNOG-mapper	76636.JOEC01000001_gene1132	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0020099_42	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0020099_42	UniRef90	UniRef90_A0A1S1EK40	CdiA_C domain-containing protein	NA
UHGV-0020099_42	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-0020099_43	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-0020099_43	UniRef90	UniRef90_Q9ZX69	Scaffolding protein	NA
UHGV-0020099_43	eggNOG-mapper	1278078.G419_25287	NA	NA
UHGV-0020099_44	PHROG	phrog_267	major head protein	head and packaging
UHGV-0020099_44	UniRef90	UniRef90_A0A7D0KIS5	Major capsid protein-like protein	NA
UHGV-0020099_44	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-0020099_44	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0020099_44	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0020099_46	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-0020099_46	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-0020099_46	Structural annotation	TIGR02215	NA	NA
UHGV-0020099_47	PHROG	phrog_501	head closure Hc1	connector
UHGV-0020099_47	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0020099_48	PHROG	phrog_16886	NA	unknown function
UHGV-0020099_48	Structural annotation	PF17395, COG5005	NA	NA
UHGV-0020099_49	PHROG	phrog_37847	NA	unknown function
UHGV-0020099_49	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-0020099_50	PHROG	phrog_476	major tail protein	tail
UHGV-0020099_50	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-0020099_50	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-0020099_50	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0020099_52	PHROG	phrog_24495	NA	unknown function
UHGV-0020099_53	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-0020099_53	eggNOG-mapper	596328.HMPREF0578_0270	NA	NA
UHGV-0020099_54	PHROG	phrog_971	endolysin	lysis
UHGV-0020099_54	eggNOG-mapper	742742.HMPREF9452_01294	phage tail tape measure protein	NA
UHGV-0020099_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA