UHGV-0020269

Genome information

Genome length 35,485 bps

CDS count 47

Completeness 97.55% (high-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0020269
vOTU ID	vOTU-063125
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_4_2182__NODE_3581_length_35485_cov_68.629123
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.55% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.1
Jumbo phage	No

Genome content
Genome length	35,485 bps
GC content	55.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.27%
Average CDS length	716.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020269_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0020269_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0020269_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0020269_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0020269_2	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-0020269_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0020269_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0020269_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0020269_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0020269_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0020269_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0020269_3	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0020269_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0020269_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0020269_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0020269_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0020269_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0020269_4	KOfam	K06904	NA	NA
UHGV-0020269_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0020269_4	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0020269_4	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0020269_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0020269_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0020269_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0020269_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0020269_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0020269_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0020269_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0020269_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0020269_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0020269_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0020269_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0020269_6	PHROG	phrog_2550	NA	unknown function
UHGV-0020269_6	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0020269_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0020269_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0020269_7	PHROG	phrog_19734	NA	unknown function
UHGV-0020269_7	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0020269_7	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0020269_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0020269_8	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0020269_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0020269_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0020269_9	UniRef90	UniRef90_A0A1C6CIQ6	Phage protein, HK97 gp10 family	NA
UHGV-0020269_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0020269_9	Structural annotation	TIGR01725	NA	NA
UHGV-0020269_10	PHROG	phrog_88	major tail protein	tail
UHGV-0020269_10	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0020269_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0020269_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0020269_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0020269_11	Structural annotation	PF11836	NA	NA
UHGV-0020269_12	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0020269_12	PHROG	phrog_23464	NA	unknown function
UHGV-0020269_12	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0020269_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0020269_12	Structural annotation	PF02050	NA	NA
UHGV-0020269_13	PHROG	phrog_1194	NA	unknown function
UHGV-0020269_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0020269_14	PHROG	phrog_13879	NA	unknown function
UHGV-0020269_14	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0020269_14	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0020269_15	PHROG	phrog_18725	NA	unknown function
UHGV-0020269_15	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0020269_17	eggNOG-mapper	189425.PGRAT_28925	XkdW protein	NA
UHGV-0020269_18	PHROG	phrog_1382	NA	unknown function
UHGV-0020269_18	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-0020269_19	PHROG	phrog_4105	NA	unknown function
UHGV-0020269_19	eggNOG-mapper	742740.HMPREF9474_02252	NA	NA
UHGV-0020269_20	PHROG	phrog_443	holin	lysis
UHGV-0020269_20	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0020269_20	eggNOG-mapper	411463.EUBVEN_02210	Putative lactococcus lactis phage r1t holin	NA
UHGV-0020269_20	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0020269_20	Structural annotation	PF16945	NA	NA
UHGV-0020269_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0020269_21	PHROG	phrog_20388	endolysin	lysis
UHGV-0020269_21	UniRef90	UniRef90_UPI001C3C0D1C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0020269_21	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0020269_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0020269_21	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0020269_21	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0020269_23	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0020269_23	UniRef90	UniRef90_UPI0009EB5089	helix-turn-helix domain-containing protein	NA
UHGV-0020269_23	eggNOG-mapper	665956.HMPREF1032_01619	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0020269_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0020269_23	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0020269_23	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0020269_24	PHROG	phrog_6802	NA	unknown function
UHGV-0020269_24	eggNOG-mapper	592026.GCWU0000282_002540	NA	NA
UHGV-0020269_27	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0020269_27	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0020269_27	UniRef90	UniRef90_A0A353Z6H0	dCTP deaminase, dUMP-forming	NA
UHGV-0020269_27	eggNOG-mapper	1121335.Clst_0069	TIGRFAM deoxycytidine triphosphate deaminase	NA
UHGV-0020269_27	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0020269_27	COG	COG0717	dCTP deaminase	NA
UHGV-0020269_27	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0020269_28	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-0020269_29	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-0020269_29	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-0020269_29	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0020269_29	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0020269_30	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0020269_30	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0020269_30	UniRef90	UniRef90_F4LTU1	SNF2-related protein	NA
UHGV-0020269_30	eggNOG-mapper	1209989.TepiRe1_2619	SNF2 family N-terminal domain	NA
UHGV-0020269_30	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0020269_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0020269_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0020269_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0020269_30	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0020269_31	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020269_31	UniRef90	UniRef90_A0A1Y4MPX2	VRR-NUC domain-containing protein	NA
UHGV-0020269_31	eggNOG-mapper	696281.Desru_1083	VRR-NUC domain protein	NA
UHGV-0020269_31	Structural annotation	PF08774, MF_01490, NF040854, COG1591	NA	NA
UHGV-0020269_32	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0020269_32	UniRef90	UniRef90_UPI00101C9F44	virulence-associated E family protein	NA
UHGV-0020269_32	eggNOG-mapper	1134413.ANNK01000054_gene2222	Virulence-associated protein E	NA
UHGV-0020269_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0020269_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0020269_32	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0020269_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0020269_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0020269_33	UniRef90	UniRef90_A0A3R6MB25	INTEIN_C_TER domain-containing protein	NA
UHGV-0020269_33	eggNOG-mapper	1235802.C823_01560	DNA polymerase	NA
UHGV-0020269_33	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0020269_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0020269_33	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0020269_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020269_34	UniRef90	UniRef90_A0A516LG50	Putative helix-destabilizing protein	NA
UHGV-0020269_34	eggNOG-mapper	525246.HMPREF0058_0732	NA	NA
UHGV-0020269_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0020269_34	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0020269_35	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0020269_35	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020269_35	UniRef90	UniRef90_UPI001451986F	NA	NA
UHGV-0020269_35	eggNOG-mapper	1117108.PAALTS15_09995	NA	NA
UHGV-0020269_35	Pfam	PF10926	NA	DUF2800
UHGV-0020269_35	COG	COG2887	RecB family exonuclease	NA
UHGV-0020269_35	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0020269_38	Structural annotation	PF12728	NA	NA
UHGV-0020269_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0020269_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0020269_39	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0020269_39	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0020269_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0020269_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0020269_39	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0020269_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0020269_41	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0020269_41	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0020269_41	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0020269_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020269_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020269_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0020269_43	KOfam	K14059	int; integrase	NA
UHGV-0020269_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0020269_43	UniRef90	UniRef90_A0A8F2JBJ7	Site-specific integrase	NA
UHGV-0020269_43	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0020269_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020269_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020269_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0020269_47	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020269_47	UniRef90	UniRef90_U4QWM3	HNH endonuclease	NA
UHGV-0020269_47	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0020269_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA