UHGV-0020339

Genome information

Genome length 40,325 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0020339
vOTU ID	vOTU-043210
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_15_1703__NODE_1734_length_40402_cov_11.242232
BioSample	SAMEA4765983
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.24
Jumbo phage	No

Genome content
Genome length	40,325 bps
GC content	52.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.02%
Average CDS length	650.04 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020339_1	PHROG	phrog_15773	NA	unknown function
UHGV-0020339_1	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0020339_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0020339_2	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0020339_2	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0020339_2	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0020339_2	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0020339_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0020339_2	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0020339_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0020339_3	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0020339_3	UniRef90	UniRef90_A0A316LD95	Sigma70_r2 domain-containing protein	NA
UHGV-0020339_3	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0020339_3	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0020339_3	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0020339_3	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0020339_3	Structural annotation	PF00196, MF_00959, NF006158, COG1191	NA	NA
UHGV-0020339_4	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0020339_4	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0020339_4	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0020339_4	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0020339_4	Pfam	PF00692	dUTPase	dUTPase
UHGV-0020339_4	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0020339_4	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0020339_4	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0020339_5	eggNOG-mapper	1121405.dsmv_2591	NA	NA
UHGV-0020339_7	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0020339_8	UniRef90	UniRef90_A0A2A7B8Y1	CopG family transcriptional regulator	NA
UHGV-0020339_8	eggNOG-mapper	1378168.N510_02331	Ribbon-helix-helix protein, copG family	NA
UHGV-0020339_8	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0020339_8	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0020339_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0020339_10	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0020339_10	UniRef90	UniRef90_UPI0010262014	phage antirepressor KilAC domain-containing protein	NA
UHGV-0020339_10	eggNOG-mapper	431943.CKL_1910	Phage antirepressor protein	NA
UHGV-0020339_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0020339_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0020339_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0020339_10	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0020339_11	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0020339_11	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0020339_11	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0020339_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0020339_13	PHROG	phrog_291	endolysin	lysis
UHGV-0020339_13	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0020339_13	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0020339_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0020339_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-0020339_13	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0020339_13	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0020339_14	PHROG	phrog_2310	NA	unknown function
UHGV-0020339_16	Structural annotation	PF07210, PF01404, TIGR03000, NF038128	NA	NA
UHGV-0020339_17	PHROG	phrog_13518	NA	unknown function
UHGV-0020339_17	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0020339_17	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0020339_18	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0020339_18	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0020339_18	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0020339_19	Structural annotation	PF16677	NA	NA
UHGV-0020339_20	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0020339_20	Structural annotation	PF11650	NA	NA
UHGV-0020339_21	PHROG	phrog_1129	holin	lysis
UHGV-0020339_21	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0020339_21	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0020339_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0020339_21	Structural annotation	PF06946	NA	NA
UHGV-0020339_22	PHROG	phrog_1863	NA	unknown function
UHGV-0020339_22	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0020339_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0020339_23	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0020339_23	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0020339_23	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0020339_23	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0020339_25	PHROG	phrog_156	portal protein	head and packaging
UHGV-0020339_25	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0020339_25	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0020339_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020339_26	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0020339_26	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0020339_26	Structural annotation	PF17375	NA	NA
UHGV-0020339_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0020339_29	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0020339_29	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0020339_29	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0020339_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0020339_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0020339_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0020339_31	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0020339_32	PHROG	phrog_15863	NA	unknown function
UHGV-0020339_32	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0020339_32	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0020339_32	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0020339_34	Structural annotation	PF17917	NA	NA
UHGV-0020339_37	UniRef90	UniRef90_A0A7M1RRU0	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0020339_37	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0020339_38	KOfam	K14059	int; integrase	NA
UHGV-0020339_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0020339_38	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0020339_38	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0020339_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020339_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020339_38	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0020339_39	UniRef90	UniRef90_A0A3C1K3F5	HTH cro/C1-type domain-containing protein	NA
UHGV-0020339_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020339_39	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0020339_42	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0020339_42	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0020339_42	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0020339_43	PHROG	phrog_1029	NA	unknown function
UHGV-0020339_43	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0020339_43	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0020339_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0020339_44	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0020339_44	UniRef90	UniRef90_A0A644YPM1	HTH cro/C1-type domain-containing protein	NA
UHGV-0020339_44	eggNOG-mapper	411467.BACCAP_02820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0020339_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020339_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0020339_45	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0020339_49	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020339_49	UniRef90	UniRef90_A0A1C5T0L2	PD-(D/E)XK nuclease superfamily	NA
UHGV-0020339_49	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0020339_49	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0020339_51	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020339_51	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0020339_51	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0020339_51	Pfam	PF03837	RecT family	RecT
UHGV-0020339_51	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0020339_53	Structural annotation	PF08962	NA	NA
UHGV-0020339_54	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0020339_54	UniRef90	UniRef90_UPI00095201A6	NA	NA
UHGV-0020339_54	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0020339_54	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0020339_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0020339_55	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020339_55	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0020339_55	eggNOG-mapper	994601.G9BW80_9CAUD	nucleic acid binding	NA
UHGV-0020339_55	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA