UHGV-0020341

Genome information

Genome length 40,601 bps

CDS count 58

Completeness 99.85% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0020341
vOTU ID	vOTU-011836
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_15_1703__NODE_1722_length_40601_cov_8.144087
BioSample	SAMEA4765983
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.33
Jumbo phage	No

Genome content
Genome length	40,601 bps
GC content	57.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.83%
Average CDS length	631.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020341_2	UniRef90	UniRef90_A0A6G3M2L8	CopG family transcriptional regulator	NA
UHGV-0020341_2	eggNOG-mapper	1122921.KB898219_gene3562	NA	NA
UHGV-0020341_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0020341_2	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0020341_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020341_4	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-0020341_4	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0020341_4	Structural annotation	PF17375	NA	NA
UHGV-0020341_5	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0020341_6	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0020341_6	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0020341_7	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0020341_8	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0020341_8	Structural annotation	PF11650	NA	NA
UHGV-0020341_9	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0020341_9	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0020341_9	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0020341_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0020341_10	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0020341_10	UniRef90	UniRef90_A0A6A8VHX7	Terminase_3 domain-containing protein	NA
UHGV-0020341_10	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0020341_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0020341_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0020341_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0020341_12	PHROG	phrog_4105	NA	unknown function
UHGV-0020341_15	PHROG	phrog_13589	NA	unknown function
UHGV-0020341_15	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0020341_15	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0020341_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-0020341_18	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0020341_18	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0020341_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0020341_20	UniRef90	UniRef90_UPI00082A3F03	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0020341_20	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0020341_20	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0020341_20	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0020341_22	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0020341_22	PHROG	phrog_7	endolysin	lysis
UHGV-0020341_22	UniRef90	UniRef90_A0A3D1LC07	SLH domain-containing protein (Fragment)	NA
UHGV-0020341_22	eggNOG-mapper	1514668.JOOA01000002_gene1588	lysozyme	NA
UHGV-0020341_22	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0020341_22	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0020341_23	PHROG	phrog_443	holin	lysis
UHGV-0020341_23	UniRef90	UniRef90_UPI001B3C9F75	holin	NA
UHGV-0020341_23	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0020341_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0020341_23	Structural annotation	PF16945	NA	NA
UHGV-0020341_25	PHROG	phrog_15863	NA	unknown function
UHGV-0020341_25	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0020341_25	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0020341_25	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0020341_26	Structural annotation	PF17917	NA	NA
UHGV-0020341_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0020341_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020341_27	UniRef90	UniRef90_D4N1J6	Holliday junction resolvase	NA
UHGV-0020341_27	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0020341_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0020341_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0020341_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0020341_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020341_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020341_28	UniRef90	UniRef90_A0A645DSK7	Single-stranded DNA-binding protein	NA
UHGV-0020341_28	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0020341_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020341_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0020341_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020341_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0020341_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020341_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0020341_31	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0020341_31	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0020341_31	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0020341_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0020341_32	UniRef90	UniRef90_A0A3R6IMQ7	NA	NA
UHGV-0020341_32	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0020341_35	PHROG	phrog_3136	NA	unknown function
UHGV-0020341_35	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0020341_35	Pfam	PF04266	ASCH domain	ASCH
UHGV-0020341_35	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0020341_35	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0020341_36	Pfam	PF04448	NA	DUF551
UHGV-0020341_36	Structural annotation	NF041588	NA	NA
UHGV-0020341_38	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0020341_38	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0020341_39	PHROG	phrog_16304	NA	unknown function
UHGV-0020341_39	UniRef90	UniRef90_A0A2K4ZME0	NA	NA
UHGV-0020341_39	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0020341_39	AcrCatalog	cluster_14472	NA	NA
UHGV-0020341_39	Pfam	PF19808	NA	DUF6291
UHGV-0020341_39	Structural annotation	PF19808	NA	NA
UHGV-0020341_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020341_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020341_41	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0020341_41	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0020341_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020341_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0020341_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020341_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0020341_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0020341_42	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020341_42	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0020341_42	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0020341_42	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0020341_46	Structural annotation	PF19885	NA	NA
UHGV-0020341_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020341_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0020341_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0020341_53	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0020341_53	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0020341_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020341_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020341_55	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0020341_56	KOfam	K14059	int; integrase	NA
UHGV-0020341_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0020341_56	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-0020341_56	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0020341_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020341_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020341_56	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0020341_57	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA