UHGV-0020593

Genome information

vOTU vOTU-061937

Genome length 40,792 bps

CDS count 55

Completeness 97.29% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0020593
vOTU ID	vOTU-061937
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_2_1640__NODE_2386_length_40792_cov_12.005354
BioSample	SAMEA4765921
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.39
Jumbo phage	No

Genome content
Genome length	40,792 bps
GC content	58.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.36%
Average CDS length	680.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020593_1	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0020593_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0020593_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0020593_2	PHROG	phrog_33872	NA	unknown function
UHGV-0020593_2	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0020593_3	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0020593_4	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0020593_4	PHROG	phrog_819	tail protein	tail
UHGV-0020593_4	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0020593_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0020593_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0020593_5	PHROG	phrog_37900	NA	unknown function
UHGV-0020593_5	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0020593_5	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0020593_5	Pfam	PF19789	NA	DUF6273
UHGV-0020593_5	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0020593_5	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-0020593_6	PHROG	phrog_35892	NA	unknown function
UHGV-0020593_6	eggNOG-mapper	246199.CUS_5875	Clostripain family	NA
UHGV-0020593_6	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0020593_6	COG	COG0711	FoF1-type ATP synthase, membrane subunit b or b'	NA
UHGV-0020593_6	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0020593_7	PHROG	phrog_937	hemolysin	other
UHGV-0020593_7	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0020593_9	PHROG	phrog_6918	holin	lysis
UHGV-0020593_9	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0020593_9	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0020593_9	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0020593_9	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0020593_10	PHROG	phrog_14030	NA	unknown function
UHGV-0020593_10	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0020593_10	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0020593_10	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0020593_12	PHROG	phrog_16490	NA	unknown function
UHGV-0020593_12	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0020593_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0020593_14	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0020593_14	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0020593_15	KOfam	K14059	int; integrase	NA
UHGV-0020593_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0020593_15	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0020593_15	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0020593_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020593_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020593_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0020593_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020593_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0020593_16	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0020593_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0020593_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0020593_21	UniRef90	UniRef90_UPI001EDCF802	helix-turn-helix domain-containing protein	NA
UHGV-0020593_21	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0020593_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020593_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020593_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0020593_24	Structural annotation	PF10548	NA	NA
UHGV-0020593_27	Structural annotation	NF041247	NA	NA
UHGV-0020593_28	Structural annotation	PF05082	NA	NA
UHGV-0020593_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0020593_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0020593_31	UniRef90	UniRef90_A0A1C5WFL3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0020593_31	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0020593_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0020593_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0020593_31	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0020593_32	PHROG	phrog_924	NA	unknown function
UHGV-0020593_32	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-0020593_32	Pfam	PF04448	NA	DUF551
UHGV-0020593_32	Structural annotation	NF041588	NA	NA
UHGV-0020593_33	PHROG	phrog_3136	NA	unknown function
UHGV-0020593_33	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0020593_33	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0020593_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0020593_33	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0020593_34	PHROG	phrog_38832	NA	unknown function
UHGV-0020593_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020593_38	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0020593_38	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0020593_38	Pfam	PF06356	NA	DUF1064
UHGV-0020593_38	Structural annotation	PF06356	NA	NA
UHGV-0020593_40	Structural annotation	PF10013	NA	NA
UHGV-0020593_42	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0020593_42	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0020593_42	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0020593_42	Structural annotation	PF08271	NA	NA
UHGV-0020593_43	PHROG	phrog_21498	NA	unknown function
UHGV-0020593_43	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0020593_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0020593_43	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0020593_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0020593_44	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0020593_44	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0020593_45	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0020593_45	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0020593_45	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0020593_45	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0020593_45	Structural annotation	PF16677	NA	NA
UHGV-0020593_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0020593_46	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0020593_46	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0020593_46	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0020593_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0020593_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0020593_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0020593_47	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0020593_47	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0020593_47	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0020593_49	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0020593_50	PHROG	phrog_37329	NA	unknown function
UHGV-0020593_50	eggNOG-mapper	1395587.P364_0113810	Fibronectin type 3 domain	NA
UHGV-0020593_50	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0020593_50	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0020593_50	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0020593_52	PHROG	phrog_156	portal protein	head and packaging
UHGV-0020593_52	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0020593_52	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0020593_53	PHROG	phrog_13908	NA	unknown function
UHGV-0020593_53	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0020593_54	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0020593_54	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0020593_54	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0020593_54	Pfam	PF13252	NA	DUF4043
UHGV-0020593_54	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0020593_54	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA