UHGV-0020735

Genome information

Genome length 35,802 bps

CDS count 56

Completeness 89.68% (medium-quality)

geNomad score 0.9633

Prediction confidence Confident

Genome information
Genome ID	UHGV-0020735
vOTU ID	vOTU-015620
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_17_1567__NODE_1678_length_35802_cov_4.360224
BioSample	SAMEA4765857
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9633
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.57
Jumbo phage	No

Genome content
Genome length	35,802 bps
GC content	60.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	83.78%
Average CDS length	539.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020735_1	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0020735_1	UniRef90	UniRef90_UPI00085C1D1A	phage tail tape measure protein	NA
UHGV-0020735_1	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0020735_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0020735_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0020735_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0020735_2	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0020735_4	PHROG	phrog_2649	endolysin	lysis
UHGV-0020735_4	eggNOG-mapper	661087.HMPREF1008_01743	Tat pathway signal sequence domain protein	NA
UHGV-0020735_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0020735_4	COG	COG3883	NA	NA
UHGV-0020735_6	eggNOG-mapper	1280681.AUJZ01000045_gene2512	NA	NA
UHGV-0020735_6	Structural annotation	PF19870, NF041681, COG3237	NA	NA
UHGV-0020735_8	PHROG	phrog_4105	NA	unknown function
UHGV-0020735_8	eggNOG-mapper	1437605.BACT_1061	NA	NA
UHGV-0020735_9	KOfam	K14059	int; integrase	NA
UHGV-0020735_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0020735_9	UniRef90	UniRef90_A0A3G9JWP5	Integrase	NA
UHGV-0020735_9	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0020735_9	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0020735_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020735_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020735_9	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0020735_11	eggNOG-mapper	1121866.AUGK01000006_gene893	NA	NA
UHGV-0020735_12	PHROG	phrog_290	minor tail protein	tail
UHGV-0020735_12	UniRef90	UniRef90_UPI001C93CFFF	phage tail tube protein	NA
UHGV-0020735_12	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0020735_12	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0020735_13	Structural annotation	PF06141	NA	NA
UHGV-0020735_14	Structural annotation	TIGR02215	NA	NA
UHGV-0020735_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0020735_15	UniRef90	UniRef90_A0A5K1JE47	Phage capsid family protein	NA
UHGV-0020735_15	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-0020735_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0020735_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0020735_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0020735_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0020735_16	UniRef90	UniRef90_A0A5K1ITB8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0020735_16	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-0020735_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0020735_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0020735_16	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0020735_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0020735_17	UniRef90	UniRef90_A0A5K1ISP8	Phage portal protein	NA
UHGV-0020735_17	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-0020735_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0020735_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0020735_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0020735_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0020735_18	UniRef90	UniRef90_A0A5K1ITE0	Phage Terminase	NA
UHGV-0020735_18	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0020735_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0020735_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0020735_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0020735_19	UniRef90	UniRef90_A0A5K1JDU9	Phage terminase, small subunit	NA
UHGV-0020735_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0020735_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0020735_26	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020735_26	UniRef90	UniRef90_A0A3D8PM05	HNH endonuclease	NA
UHGV-0020735_26	eggNOG-mapper	546275.FUSPEROL_02054	HNH endonuclease	NA
UHGV-0020735_26	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0020735_26	Structural annotation	PF13392	NA	NA
UHGV-0020735_27	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0020735_27	eggNOG-mapper	1123237.Salmuc_02432	NA	NA
UHGV-0020735_28	PHROG	phrog_24189	NA	unknown function
UHGV-0020735_28	UniRef90	UniRef90_UPI0013EB162E	NA	NA
UHGV-0020735_28	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0020735_28	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0020735_30	UniRef90	UniRef90_A0A7K3XYV9	NA	NA
UHGV-0020735_30	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0020735_31	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0020735_31	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0020735_31	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0020735_34	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0020735_36	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0020735_37	PHROG	phrog_21525	NA	unknown function
UHGV-0020735_39	Structural annotation	PF18195, NF041655	NA	NA
UHGV-0020735_41	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0020735_41	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0020735_43	PHROG	phrog_2340	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020735_43	eggNOG-mapper	1414766.A0A0A0P0H0_9VIRU	NA	NA
UHGV-0020735_43	Structural annotation	PF18275	NA	NA
UHGV-0020735_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020735_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020735_44	UniRef90	UniRef90_A0A415JIF1	Single-stranded DNA-binding protein	NA
UHGV-0020735_44	eggNOG-mapper	649764.HMPREF0762_01175	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0020735_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020735_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0020735_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020735_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0020735_44	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0020735_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0020735_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020735_45	UniRef90	UniRef90_A0A5K1IT79	RecT family protein	NA
UHGV-0020735_45	eggNOG-mapper	1504822.CCNO01000015_gene598	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0020735_45	Pfam	PF03837	RecT family	RecT
UHGV-0020735_45	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0020735_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0020735_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0020735_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020735_46	UniRef90	UniRef90_A0A5K1ITA1	YqaJ-like viral recombinase domain protein	NA
UHGV-0020735_46	eggNOG-mapper	1504822.CCNO01000015_gene597	YqaJ viral recombinase family	NA
UHGV-0020735_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0020735_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0020735_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0020735_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0020735_47	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020735_47	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0020735_47	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-0020735_47	Structural annotation	COG1591	NA	NA
UHGV-0020735_49	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0020735_50	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0020735_50	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020735_50	UniRef90	UniRef90_UPI000B49DA85	HNH endonuclease	NA
UHGV-0020735_50	eggNOG-mapper	697281.Mahau_2833	HNH nucleases	NA
UHGV-0020735_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0020735_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0020735_50	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0020735_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0020735_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0020735_53	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-0020735_53	eggNOG-mapper	1504822.CCNO01000015_gene589	SOS response	NA
UHGV-0020735_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0020735_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0020735_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0020735_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0020735_54	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0020735_54	UniRef90	UniRef90_A0A3E4QYT3	Abi family protein	NA
UHGV-0020735_54	eggNOG-mapper	1235794.C811_01011	Abi-like protein	NA
UHGV-0020735_54	PADLOC	AbiD	AbiD	Abi
UHGV-0020735_54	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0020735_54	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0020735_54	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0020735_55	KOfam	K14059	int; integrase	NA
UHGV-0020735_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0020735_55	UniRef90	UniRef90_UPI00195D3E71	tyrosine-type recombinase/integrase	NA
UHGV-0020735_55	eggNOG-mapper	670487.Ocepr_1516	Belongs to the 'phage' integrase family	NA
UHGV-0020735_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020735_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020735_55	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0020735_56	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0020735_56	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0020735_56	UniRef90	UniRef90_A0A3C1D955	RNA polymerase sigma factor (Fragment)	NA
UHGV-0020735_56	eggNOG-mapper	1504822.CCNO01000015_gene782	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0020735_56	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0020735_56	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0020735_56	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0020735_56	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0020735_56	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA