UHGV-0021019

Genome information

Genome length 21,086 bps

CDS count 34

Completeness 54.70% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021019
vOTU ID	vOTU-031841
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_6964_length_21086_cov_7.204008
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.36
Jumbo phage	No

Genome content
Genome length	21,086 bps
GC content	56.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	93.30%
Average CDS length	582.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021019_1	KOfam	K01409	OSGEP, KAE1, QRI7; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]	NA
UHGV-0021019_1	PHROG	phrog_15614	NA	unknown function
UHGV-0021019_1	UniRef90	UniRef90_A0A316PUF6	tRNA N6-adenosine threonylcarbamoyltransferase	NA
UHGV-0021019_1	eggNOG-mapper	877414.ATWA01000025_gene313	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	NA
UHGV-0021019_1	Pfam	PF00814	tRNA N6-adenosine threonylcarbamoyltransferase	TsaD
UHGV-0021019_1	COG	COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	NA
UHGV-0021019_2	KOfam	K14059	int; integrase	NA
UHGV-0021019_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0021019_2	UniRef90	UniRef90_UPI00095121BF	site-specific integrase	NA
UHGV-0021019_2	eggNOG-mapper	1291050.JAGE01000002_gene3375	Belongs to the 'phage' integrase family	NA
UHGV-0021019_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0021019_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0021019_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0021019_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0021019_2	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0021019_3	PHROG	phrog_7974	NA	unknown function
UHGV-0021019_3	eggNOG-mapper	1175629.AJTG01000007_gene1035	NA	NA
UHGV-0021019_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0021019_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0021019_4	UniRef90	UniRef90_A0A7X5EGH7	LexA family transcriptional regulator	NA
UHGV-0021019_4	eggNOG-mapper	445972.ANACOL_00135	Helix-turn-helix XRE-family like proteins	NA
UHGV-0021019_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0021019_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0021019_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0021019_4	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0021019_5	UniRef90	UniRef90_UPI0014131030	helix-turn-helix transcriptional regulator	NA
UHGV-0021019_5	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0021019_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0021019_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0021019_8	UniRef90	UniRef90_UPI00117C9CA9	helix-turn-helix domain-containing protein	NA
UHGV-0021019_8	eggNOG-mapper	1291050.JAGE01000002_gene3380	NA	NA
UHGV-0021019_8	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0021019_11	Structural annotation	PF19607	NA	NA
UHGV-0021019_14	PHROG	phrog_674	NA	unknown function
UHGV-0021019_14	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0021019_14	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0021019_14	Pfam	PF07083	NA	DUF1351
UHGV-0021019_14	Structural annotation	PF07083	NA	NA
UHGV-0021019_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0021019_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0021019_15	UniRef90	UniRef90_UPI0006895D66	recombinase RecT	NA
UHGV-0021019_15	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0021019_15	Pfam	PF03837	RecT family	RecT
UHGV-0021019_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0021019_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0021019_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0021019_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0021019_16	UniRef90	UniRef90_R6LWZ4	Lactamase_B domain-containing protein	NA
UHGV-0021019_16	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0021019_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0021019_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0021019_16	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0021019_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0021019_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0021019_18	UniRef90	UniRef90_A0A316PSZ3	Single-stranded DNA-binding protein	NA
UHGV-0021019_18	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-0021019_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0021019_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0021019_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0021019_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0021019_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0021019_19	PHROG	phrog_16304	NA	unknown function
UHGV-0021019_19	Pfam	PF19808	NA	DUF6291
UHGV-0021019_19	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0021019_19	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0021019_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0021019_20	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0021019_20	UniRef90	UniRef90_A0A1Q5XL74	Methyltransferase	NA
UHGV-0021019_20	eggNOG-mapper	1497679.EP56_08455	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0021019_20	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0021019_20	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0021019_20	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0021019_20	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0021019_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0021019_21	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0021019_21	UniRef90	UniRef90_A0A1H8KWN4	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0021019_21	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0021019_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0021019_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0021019_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0021019_22	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0021019_22	UniRef90	UniRef90_A0A1L5F8R0	Replication terminator protein	NA
UHGV-0021019_22	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0021019_23	PHROG	phrog_1029	NA	unknown function
UHGV-0021019_23	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0021019_23	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0021019_26	eggNOG-mapper	910313.HMPREF9320_1544	Peptidase S24-like	NA
UHGV-0021019_26	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0021019_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0021019_26	Structural annotation	PF13560, NF007257, COG1476	NA	NA
UHGV-0021019_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0021019_27	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0021019_27	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0021019_27	Pfam	PF07374	NA	DUF1492
UHGV-0021019_27	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0021019_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0021019_28	PHROG	phrog_12862	NA	unknown function
UHGV-0021019_28	UniRef90	UniRef90_A0A252F2H6	Methyltransferase	NA
UHGV-0021019_28	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0021019_28	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0021019_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0021019_28	COG	COG0863	DNA modification methylase	NA
UHGV-0021019_28	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0021019_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0021019_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0021019_29	UniRef90	UniRef90_A0A416IA81	Terminase small subunit	NA
UHGV-0021019_29	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0021019_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0021019_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0021019_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0021019_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0021019_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0021019_30	UniRef90	UniRef90_A0A174S812	Phage terminase, large subunit, PBSX family	NA
UHGV-0021019_30	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0021019_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0021019_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0021019_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0021019_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0021019_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0021019_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0021019_31	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-0021019_31	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0021019_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0021019_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0021019_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0021019_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0021019_32	UniRef90	UniRef90_A0A174MDW7	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0021019_32	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0021019_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0021019_32	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0021019_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0021019_32	COG	COG2369	NA	NA
UHGV-0021019_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0021019_34	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0021019_34	COG	COG2868	NA	NA