UHGV-0021143

Genome information

Genome length 36,061 bps

CDS count 61

Completeness 98.12% (high-quality)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021143
vOTU ID	vOTU-074563
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_17_1555__NODE_737_length_36061_cov_26.777512
BioSample	SAMEA4765845
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.84
Jumbo phage	No

Genome content
Genome length	36,061 bps
GC content	29.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.93%
Average CDS length	535.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021143_1	KOfam	K14059	int; integrase	NA
UHGV-0021143_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0021143_1	UniRef90	UniRef90_UPI001A9B7288	site-specific integrase	NA
UHGV-0021143_1	eggNOG-mapper	748727.CLJU_c32470	Belongs to the 'phage' integrase family	NA
UHGV-0021143_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0021143_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0021143_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0021143_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0021143_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0021143_3	UniRef90	UniRef90_UPI0018AB6ECB	helix-turn-helix domain-containing protein	NA
UHGV-0021143_3	eggNOG-mapper	1211817.CCAT010000003_gene272	Helix-turn-helix XRE-family like proteins	NA
UHGV-0021143_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0021143_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0021143_3	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0021143_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0021143_5	UniRef90	UniRef90_UPI0018A8C732	helix-turn-helix transcriptional regulator	NA
UHGV-0021143_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0021143_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0021143_5	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0021143_6	UniRef90	UniRef90_UPI0018ABFF4A	helix-turn-helix domain-containing protein	NA
UHGV-0021143_6	eggNOG-mapper	1408254.T458_05140	Helix-turn-helix domain	NA
UHGV-0021143_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0021143_6	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0021143_7	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0021143_9	UniRef90	UniRef90_A0A846JUT2	Helix-turn-helix domain-containing protein	NA
UHGV-0021143_9	eggNOG-mapper	1280689.AUJC01000001_gene1996	Helix-turn-helix domain	NA
UHGV-0021143_10	PHROG	phrog_7199	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0021143_10	eggNOG-mapper	536233.CLO_0862	NA	NA
UHGV-0021143_11	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0021143_11	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0021143_11	UniRef90	UniRef90_UPI001666E70D	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0021143_11	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0021143_11	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0021143_11	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0021143_11	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0021143_15	PHROG	phrog_98	NA	unknown function
UHGV-0021143_15	UniRef90	UniRef90_UPI0018AB3175	YopX family protein	NA
UHGV-0021143_15	eggNOG-mapper	1220589.CD32_00355	YopX protein	NA
UHGV-0021143_15	Pfam	PF09643	YopX protein	YopX
UHGV-0021143_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0021143_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0021143_17	PHROG	phrog_14970	NA	unknown function
UHGV-0021143_17	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0021143_17	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0021143_17	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0021143_17	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0021143_17	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0021143_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0021143_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0021143_20	UniRef90	UniRef90_R6FRH6	Single-stranded DNA-binding protein	NA
UHGV-0021143_20	eggNOG-mapper	545697.HMPREF0216_00118	Single-stranded DNA-binding protein	NA
UHGV-0021143_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0021143_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0021143_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0021143_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0021143_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0021143_21	eggNOG-mapper	1414720.CBYM010000001_gene686	NA	NA
UHGV-0021143_21	Structural annotation	NF011482	NA	NA
UHGV-0021143_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0021143_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0021143_22	UniRef90	UniRef90_UPI001AD8BD71	dUTP diphosphatase	NA
UHGV-0021143_22	eggNOG-mapper	1035196.HMPREF9998_00926	dUTPase	NA
UHGV-0021143_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-0021143_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0021143_22	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0021143_23	eggNOG-mapper	1414720.CBYM010000001_gene681	NA	NA
UHGV-0021143_25	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0021143_25	UniRef90	UniRef90_UPI0018A8EF5C	ERCC4 domain-containing protein	NA
UHGV-0021143_25	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-0021143_25	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0021143_25	Structural annotation	PF02732, NF040956	NA	NA
UHGV-0021143_26	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0021143_26	UniRef90	UniRef90_UPI001EDCE8F7	HTH domain-containing protein	NA
UHGV-0021143_26	eggNOG-mapper	536232.CLM_2560	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0021143_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0021143_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0021143_26	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0021143_26	Structural annotation	PF13936, NF040595, COG2771	NA	NA
UHGV-0021143_27	eggNOG-mapper	1415774.U728_1108	NA	NA
UHGV-0021143_29	PHROG	phrog_1485	NA	unknown function
UHGV-0021143_29	eggNOG-mapper	545697.HMPREF0216_02824	NA	NA
UHGV-0021143_29	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0021143_29	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0021143_31	UniRef90	UniRef90_E9SEU0	Conserved domain protein	NA
UHGV-0021143_31	eggNOG-mapper	1415774.U728_858	NA	NA
UHGV-0021143_32	Structural annotation	PF20027	NA	NA
UHGV-0021143_33	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0021143_33	PHROG	phrog_26824	NA	unknown function
UHGV-0021143_33	UniRef90	UniRef90_UPI0018A9C7CA	CHC2 zinc finger domain-containing protein	NA
UHGV-0021143_33	eggNOG-mapper	318464.IO99_17950	DNA primase	NA
UHGV-0021143_33	PADLOC	drt-cluster192	DRT	DRT
UHGV-0021143_33	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0021143_33	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0021143_33	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0021143_33	Structural annotation	PF08706, PF05272, PF19898, MF_00974, MF_00016, NF005477, COG3378	NA	NA
UHGV-0021143_34	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0021143_34	UniRef90	UniRef90_A0A1C6CU48	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0021143_34	eggNOG-mapper	1391647.AVSV01000022_gene2554	NA	NA
UHGV-0021143_34	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0021143_34	Structural annotation	PF13384, COG3677	NA	NA
UHGV-0021143_35	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0021143_35	UniRef90	UniRef90_UPI001A9B46F0	terminase	NA
UHGV-0021143_35	eggNOG-mapper	1499683.CCFF01000017_gene2143	TIGRFAM Phage	NA
UHGV-0021143_35	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0021143_35	COG	COG5362	Phage terminase large subunit	NA
UHGV-0021143_35	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0021143_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0021143_36	UniRef90	UniRef90_UPI0018AB594C	phage portal protein	NA
UHGV-0021143_36	eggNOG-mapper	1499683.CCFF01000017_gene2144	portal protein, SPP1 Gp6-like	NA
UHGV-0021143_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0021143_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0021143_37	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0021143_37	UniRef90	UniRef90_UPI0018AA6954	minor capsid protein	NA
UHGV-0021143_37	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-0021143_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0021143_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0021143_37	COG	COG2369	NA	NA
UHGV-0021143_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0021143_38	PHROG	phrog_918	NA	unknown function
UHGV-0021143_38	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0021143_38	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0021143_38	Pfam	PF19791	NA	DUF6275
UHGV-0021143_38	Structural annotation	PF19791	NA	NA
UHGV-0021143_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0021143_39	UniRef90	UniRef90_UPI0018AA774C	NA	NA
UHGV-0021143_39	eggNOG-mapper	1151292.QEW_0415	NA	NA
UHGV-0021143_39	Pfam	PF14265	NA	DUF4355
UHGV-0021143_39	Structural annotation	PF14265	NA	NA
UHGV-0021143_40	PHROG	phrog_267	major head protein	head and packaging
UHGV-0021143_40	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-0021143_40	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-0021143_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0021143_41	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-0021143_42	eggNOG-mapper	1499683.CCFF01000005_gene72	NA	NA
UHGV-0021143_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0021143_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0021143_43	UniRef90	UniRef90_UPI0018A8F3E1	HK97 gp10 family phage protein	NA
UHGV-0021143_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0021143_43	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0021143_44	Structural annotation	PF20765	NA	NA
UHGV-0021143_45	PHROG	phrog_885	major tail protein	tail
UHGV-0021143_45	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-0021143_45	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0021143_46	PHROG	phrog_1021	NA	unknown function
UHGV-0021143_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0021143_48	UniRef90	UniRef90_UPI001897835A	phage tail tape measure protein	NA
UHGV-0021143_48	eggNOG-mapper	1280689.AUJC01000007_gene3308	tape measure	NA
UHGV-0021143_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0021143_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0021143_49	UniRef90	UniRef90_R4K3C0	Phage tail protein	NA
UHGV-0021143_49	eggNOG-mapper	86416.Clopa_2784	Phage tail protein	NA
UHGV-0021143_49	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0021143_50	UniRef90	UniRef90_L1QEZ1	Phage minor structural protein	NA
UHGV-0021143_50	eggNOG-mapper	545697.HMPREF0216_01733	NA	NA
UHGV-0021143_50	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0021143_51	PHROG	phrog_9534	head protein	head and packaging
UHGV-0021143_51	eggNOG-mapper	86416.Clopa_1911	NA	NA
UHGV-0021143_53	eggNOG-mapper	1536774.H70357_31670	NA	NA
UHGV-0021143_53	Structural annotation	NF040910	NA	NA
UHGV-0021143_54	eggNOG-mapper	1122947.FR7_3211	Polysaccharide deacetylase	NA
UHGV-0021143_54	Pfam	PF01522	Polysaccharide deacetylase	Polysacc_deac_1
UHGV-0021143_54	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA
UHGV-0021143_56	UniRef90	UniRef90_A0A7V8IA54	Phage phi LC3 family holin	NA
UHGV-0021143_56	eggNOG-mapper	525367.HMPREF0556_10974	Bacteriophage holin	NA
UHGV-0021143_56	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0021143_56	COG	COG5546	NA	NA
UHGV-0021143_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0021143_57	PHROG	phrog_435	endolysin	lysis
UHGV-0021143_57	UniRef90	UniRef90_UPI0018974933	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0021143_57	eggNOG-mapper	1540257.JQMW01000009_gene3391	Ami_3	NA
UHGV-0021143_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0021143_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0021143_57	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0021143_58	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0021143_58	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0021143_58	UniRef90	UniRef90_A0A6B4JNM6	ParM/StbA family protein	NA
UHGV-0021143_58	eggNOG-mapper	536233.CLO_1876	StbA protein	NA
UHGV-0021143_58	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0021143_58	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0021143_58	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0021143_58	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0021143_59	UniRef90	UniRef90_UPI00189C4CB6	circadian clock-controlled protein	NA
UHGV-0021143_59	eggNOG-mapper	1033737.CAEV01000075_gene567	NA	NA