UHGV-0021352

Genome information

Genome length 31,484 bps

CDS count 54

Completeness 85.46% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021352
vOTU ID	vOTU-026675
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_N_3_1523__NODE_2070_length_31484_cov_6.409940
BioSample	SAMEA4765814
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.97
Jumbo phage	No

Genome content
Genome length	31,484 bps
GC content	27.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.47%
Average CDS length	542.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021352_3	PHROG	phrog_1281	NA	unknown function
UHGV-0021352_3	UniRef90	UniRef90_R5N7Q9	NA	NA
UHGV-0021352_3	eggNOG-mapper	875454.BAEW01000002_gene485	NA	NA
UHGV-0021352_3	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0021352_3	COG	COG3600	NA	NA
UHGV-0021352_3	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0021352_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0021352_6	PHROG	phrog_3088	amidase	lysis
UHGV-0021352_6	UniRef90	UniRef90_A0A1Q6JUS1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0021352_6	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0021352_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0021352_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0021352_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0021352_8	Structural annotation	PF16938	NA	NA
UHGV-0021352_9	PHROG	phrog_937	hemolysin	other
UHGV-0021352_9	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0021352_10	PHROG	phrog_2310	NA	unknown function
UHGV-0021352_10	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-0021352_11	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0021352_15	Structural annotation	PF20747	NA	NA
UHGV-0021352_16	PHROG	phrog_7064	tail protein	tail
UHGV-0021352_16	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-0021352_16	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0021352_17	PHROG	phrog_13564	minor tail protein	tail
UHGV-0021352_17	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0021352_17	eggNOG-mapper	1469948.JPNB01000001_gene703	NA	NA
UHGV-0021352_17	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0021352_17	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0021352_19	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0021352_20	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0021352_20	UniRef90	UniRef90_A0A3R6SN90	Phage tail tape measure protein	NA
UHGV-0021352_20	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0021352_20	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0021352_20	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0021352_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0021352_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0021352_22	PHROG	phrog_709	NA	unknown function
UHGV-0021352_22	Structural annotation	PF11836	NA	NA
UHGV-0021352_23	PHROG	phrog_88	major tail protein	tail
UHGV-0021352_23	UniRef90	UniRef90_UPI001CBE6475	phage tail protein	NA
UHGV-0021352_23	eggNOG-mapper	1469948.JPNB01000001_gene698	phage major tail protein, phi13 family	NA
UHGV-0021352_23	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0021352_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0021352_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0021352_24	UniRef90	UniRef90_A0A2H4J234	Putative aminopeptidase	NA
UHGV-0021352_24	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-0021352_24	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0021352_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0021352_25	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0021352_25	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-0021352_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0021352_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0021352_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0021352_26	eggNOG-mapper	272626.lin2574	head-tail adaptor	NA
UHGV-0021352_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0021352_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0021352_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0021352_27	PHROG	phrog_5223	neck protein	connector
UHGV-0021352_27	UniRef90	UniRef90_UPI0017869A34	head-tail connector protein	NA
UHGV-0021352_27	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0021352_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0021352_28	UniRef90	UniRef90_A0A8J8M8F5	Phage major capsid protein	NA
UHGV-0021352_28	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0021352_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0021352_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0021352_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0021352_29	KOfam	K06904	NA	NA
UHGV-0021352_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0021352_29	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0021352_29	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0021352_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0021352_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0021352_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0021352_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0021352_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0021352_30	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-0021352_30	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0021352_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0021352_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0021352_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0021352_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0021352_31	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0021352_31	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0021352_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0021352_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0021352_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0021352_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0021352_32	PHROG	phrog_1066	NA	unknown function
UHGV-0021352_32	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-0021352_35	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0021352_36	PHROG	phrog_3886	NA	unknown function
UHGV-0021352_36	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0021352_37	KOfam	K03744	lemA; LemA protein	NA
UHGV-0021352_37	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0021352_37	UniRef90	UniRef90_A0A1Q6M2C0	LemA family protein	NA
UHGV-0021352_37	eggNOG-mapper	742733.HMPREF9469_05057	LemA family	NA
UHGV-0021352_37	Pfam	PF04011	LemA family	LemA
UHGV-0021352_37	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0021352_37	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0021352_41	PHROG	phrog_11947	NA	unknown function
UHGV-0021352_45	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0021352_45	UniRef90	UniRef90_A0A3E4QZ32	NA	NA
UHGV-0021352_45	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0021352_45	Pfam	PF14359	NA	DUF4406
UHGV-0021352_45	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0021352_51	eggNOG-mapper	138119.DSY2188	NA	NA
UHGV-0021352_53	UniRef90	UniRef90_A0A1Q6M1X1	HTH_11 domain-containing protein	NA
UHGV-0021352_53	Pfam	PF08279	HTH domain	HTH_11
UHGV-0021352_53	Structural annotation	PF21715, TIGR00122	NA	NA