UHGV-0021388

Genome information

Genome length 38,052 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9647

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021388
vOTU ID	vOTU-009388
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_P_17_1504__NODE_1442_length_38052_cov_11.198947
BioSample	SAMEA4765796
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9647
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.03
Jumbo phage	No

Genome content
Genome length	38,052 bps
GC content	28.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.21%
Average CDS length	686.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021388_1	PHROG	phrog_7566	NA	unknown function
UHGV-0021388_1	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0021388_2	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0021388_2	PHROG	phrog_6700	endolysin	lysis
UHGV-0021388_2	UniRef90	UniRef90_A0A847VZM8	M23 family metallopeptidase	NA
UHGV-0021388_2	eggNOG-mapper	526226.Gbro_4940	Transglycosylase-like domain	NA
UHGV-0021388_2	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0021388_2	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0021388_2	Structural annotation	PF01551, PF08460, NF040883, COG0739, COG3103	NA	NA
UHGV-0021388_3	Structural annotation	PF06946	NA	NA
UHGV-0021388_4	Structural annotation	PF07041	NA	NA
UHGV-0021388_6	Structural annotation	PF17790, NF011770	NA	NA
UHGV-0021388_7	PHROG	phrog_13632	NA	unknown function
UHGV-0021388_7	eggNOG-mapper	1399942.U3PIX4_9CAUD	NA	NA
UHGV-0021388_8	PHROG	phrog_372	tail protein	tail
UHGV-0021388_8	UniRef90	UniRef90_A0A412AYA6	Fibronectin type-III domain-containing protein	NA
UHGV-0021388_8	eggNOG-mapper	1507.HMPREF0262_00218	tail collar domain protein	NA
UHGV-0021388_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0021388_8	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG1361, COG4675	NA	NA
UHGV-0021388_9	PHROG	phrog_21973	tail protein	tail
UHGV-0021388_9	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-0021388_10	eggNOG-mapper	871968.DESME_08840	NA	NA
UHGV-0021388_10	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0021388_13	UniRef90	UniRef90_UPI001407F823	NA	NA
UHGV-0021388_13	eggNOG-mapper	445971.ANASTE_00721	NA	NA
UHGV-0021388_13	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0021388_14	PHROG	phrog_13046	NA	unknown function
UHGV-0021388_14	Structural annotation	PF20387	NA	NA
UHGV-0021388_16	eggNOG-mapper	78344.BIGA_0457	NA	NA
UHGV-0021388_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0021388_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-0021388_18	eggNOG-mapper	445971.ANASTE_00716	NA	NA
UHGV-0021388_18	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0021388_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0021388_21	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0021388_21	UniRef90	UniRef90_A0A843HPA6	Terminase family protein	NA
UHGV-0021388_21	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0021388_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0021388_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0021388_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0021388_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0021388_22	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-0021388_22	UniRef90	UniRef90_A0A0V8DX64	Phage terminase small subunit	NA
UHGV-0021388_22	eggNOG-mapper	1121871.AUAT01000040_gene914	NA	NA
UHGV-0021388_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0021388_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0021388_24	Structural annotation	PF15456	NA	NA
UHGV-0021388_32	PHROG	phrog_1233	NA	unknown function
UHGV-0021388_32	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0021388_33	UniRef90	UniRef90_A0A1Q6L7Q8	NOB1_Zn_bind domain-containing protein	NA
UHGV-0021388_33	Structural annotation	PF09947	NA	NA
UHGV-0021388_34	PHROG	phrog_98	NA	unknown function
UHGV-0021388_34	UniRef90	UniRef90_UPI0004617A68	YopX family protein	NA
UHGV-0021388_34	eggNOG-mapper	797515.HMPREF9103_02492	YopX protein	NA
UHGV-0021388_34	Pfam	PF09643	YopX protein	YopX
UHGV-0021388_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0021388_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0021388_37	Pfam	PF04570	zinc-finger of the FCS-type, C2-C2	zf-FLZ
UHGV-0021388_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0021388_38	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0021388_38	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0021388_39	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0021388_39	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0021388_39	UniRef90	UniRef90_A0A0E1KQR8	Methyltransferase	NA
UHGV-0021388_39	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0021388_39	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0021388_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0021388_39	COG	COG0863	DNA modification methylase	NA
UHGV-0021388_39	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0021388_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0021388_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0021388_40	UniRef90	UniRef90_A0A7X6SI00	Single-stranded DNA-binding protein	NA
UHGV-0021388_40	eggNOG-mapper	1385512.N784_08510	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0021388_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0021388_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0021388_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0021388_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0021388_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0021388_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0021388_41	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0021388_41	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0021388_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0021388_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0021388_41	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0021388_43	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0021388_43	UniRef90	UniRef90_UPI000F63F93F	ERF family protein	NA
UHGV-0021388_43	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0021388_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-0021388_43	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0021388_47	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0021388_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0021388_47	UniRef90	UniRef90_R5A158	DnaD domain protein	NA
UHGV-0021388_47	eggNOG-mapper	1123299.AUKZ01000018_gene209	Replication initiation and membrane attachment	NA
UHGV-0021388_47	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0021388_47	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0021388_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0021388_47	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0021388_49	PHROG	phrog_989	NA	unknown function
UHGV-0021388_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0021388_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0021388_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0021388_51	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0021388_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0021388_51	UniRef90	UniRef90_A0A353JBB9	HTH cro/C1-type domain-containing protein	NA
UHGV-0021388_51	eggNOG-mapper	153721.MYP_1445	sequence-specific DNA binding	NA
UHGV-0021388_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0021388_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0021388_51	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0021388_53	KOfam	K14059	int; integrase	NA
UHGV-0021388_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0021388_53	UniRef90	UniRef90_R7IG47	Putative phage integrase	NA
UHGV-0021388_53	eggNOG-mapper	224308.BSU04800	Belongs to the 'phage' integrase family	NA
UHGV-0021388_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0021388_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0021388_53	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA