UHGV-0021460

Genome information

Genome length 52,413 bps

CDS count 78

Completeness 85.56% (medium-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021460
vOTU ID	vOTU-024008
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_2057_length_52413_cov_40.728944
BioSample	SAMEA4766007
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.85
Jumbo phage	No

Genome content
Genome length	52,413 bps
GC content	57.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	89.05%
Average CDS length	601.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021460_2	PHROG	phrog_16490	NA	unknown function
UHGV-0021460_2	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0021460_2	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0021460_3	PHROG	phrog_31654	NA	unknown function
UHGV-0021460_3	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0021460_4	PHROG	phrog_28898	NA	unknown function
UHGV-0021460_4	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0021460_4	Structural annotation	PF10781	NA	NA
UHGV-0021460_6	PHROG	phrog_38431	NA	unknown function
UHGV-0021460_6	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0021460_6	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0021460_7	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0021460_7	eggNOG-mapper	762968.HMPREF9441_00550	NA	NA
UHGV-0021460_8	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0021460_8	eggNOG-mapper	195253.Syn6312_0894	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0021460_8	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0021460_8	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0021460_11	PHROG	phrog_1233	NA	unknown function
UHGV-0021460_11	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0021460_17	PHROG	phrog_21498	NA	unknown function
UHGV-0021460_17	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0021460_17	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0021460_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0021460_17	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0021460_18	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0021460_18	UniRef90	UniRef90_A0A3A9AQS2	HNH endonuclease	NA
UHGV-0021460_18	eggNOG-mapper	1235797.C816_00946	NA	NA
UHGV-0021460_20	eggNOG-mapper	1392486.JIAF01000004_gene836	NA	NA
UHGV-0021460_20	AcrCatalog	cluster_47493	NA	NA
UHGV-0021460_21	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0021460_21	UniRef90	UniRef90_A0A173Z8S3	NUMOD4 motif	NA
UHGV-0021460_21	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-0021460_21	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0021460_21	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0021460_21	Structural annotation	PF07463	NA	NA
UHGV-0021460_22	UniRef90	UniRef90_UPI001E31AD68	RpiR family transcriptional regulator	NA
UHGV-0021460_22	eggNOG-mapper	1392486.JIAF01000004_gene1676	NA	NA
UHGV-0021460_22	Structural annotation	PF02796	NA	NA
UHGV-0021460_24	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0021460_25	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0021460_25	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0021460_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0021460_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0021460_26	UniRef90	UniRef90_R6EXV2	Single-stranded DNA-binding protein	NA
UHGV-0021460_26	eggNOG-mapper	1163617.SCD_n00654	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0021460_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0021460_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0021460_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0021460_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0021460_26	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0021460_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0021460_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0021460_27	UniRef90	UniRef90_A0A1T5IDA7	Single-strand DNA-binding protein	NA
UHGV-0021460_27	eggNOG-mapper	1442599.JAAN01000030_gene2109	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0021460_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0021460_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0021460_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0021460_28	Structural annotation	PF07848, MF_01819, NF041413, COG0640	NA	NA
UHGV-0021460_29	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0021460_29	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0021460_29	UniRef90	UniRef90_UPI001899AE0B	replicative DNA helicase	NA
UHGV-0021460_29	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0021460_29	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0021460_29	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0021460_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0021460_29	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0021460_30	PHROG	phrog_15768	NA	unknown function
UHGV-0021460_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0021460_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0021460_31	UniRef90	UniRef90_A0A373NQX9	HNH endonuclease	NA
UHGV-0021460_31	eggNOG-mapper	1437425.CSEC_2012	phage envelope protein	NA
UHGV-0021460_31	COG	COG5562	NA	NA
UHGV-0021460_34	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0021460_34	UniRef90	UniRef90_UPI000D8884BC	NA	NA
UHGV-0021460_34	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0021460_34	Pfam	PF07105	NA	DUF1367
UHGV-0021460_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0021460_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0021460_35	UniRef90	UniRef90_A0A7X6SCH5	Single-stranded DNA-binding protein	NA
UHGV-0021460_35	eggNOG-mapper	1408473.JHXO01000005_gene1506	Single-stranded DNA-binding protein	NA
UHGV-0021460_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0021460_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0021460_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0021460_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0021460_35	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0021460_36	PHROG	phrog_6244	NA	unknown function
UHGV-0021460_36	UniRef90	UniRef90_A6L492	PDDEXK_1 domain-containing protein	NA
UHGV-0021460_36	eggNOG-mapper	585502.HMPREF0645_2602	NA	NA
UHGV-0021460_36	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0021460_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0021460_37	UniRef90	UniRef90_UPI001D088C20	ERF family protein	NA
UHGV-0021460_37	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-0021460_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0021460_37	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0021460_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0021460_43	eggNOG-mapper	1121100.JCM6294_554	NA	NA
UHGV-0021460_43	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0021460_47	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0021460_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0021460_47	UniRef90	UniRef90_A0A349YJ39	Tyr recombinase domain-containing protein	NA
UHGV-0021460_47	eggNOG-mapper	1123278.KB893569_gene2291	Phage integrase family	NA
UHGV-0021460_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0021460_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0021460_47	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0021460_48	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0021460_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0021460_48	UniRef90	UniRef90_A0A0E2APF2	Tyr recombinase domain-containing protein	NA
UHGV-0021460_48	eggNOG-mapper	742727.HMPREF9447_04803	Phage integrase family	NA
UHGV-0021460_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0021460_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0021460_48	Structural annotation	PF00589, MF_02055, NF001399, COG4974	NA	NA
UHGV-0021460_54	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0021460_54	eggNOG-mapper	1121129.KB903373_gene436	Antirestriction protein (ArdA)	NA
UHGV-0021460_54	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0021460_54	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0021460_54	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0021460_56	Structural annotation	MF_00273	NA	NA
UHGV-0021460_57	UniRef90	UniRef90_A0A7C6CF74	NA	NA
UHGV-0021460_57	Pfam	PF12098	NA	DUF3574
UHGV-0021460_58	eggNOG-mapper	742727.HMPREF9447_04817	NA	NA
UHGV-0021460_60	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0021460_60	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0021460_60	UniRef90	UniRef90_A0A7Z6S579	SF3 helicase domain-containing protein	NA
UHGV-0021460_60	eggNOG-mapper	1131812.JQMS01000001_gene1182	D5 N terminal like	NA
UHGV-0021460_60	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0021460_60	Pfam	PF19263	NA	DUF5906
UHGV-0021460_60	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0021460_60	Structural annotation	PF05272, PF08706, TIGR01613, COG3378	NA	NA
UHGV-0021460_63	eggNOG-mapper	1121100.JCM6294_591	NA	NA
UHGV-0021460_63	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0021460_64	PHROG	phrog_64	portal protein	head and packaging
UHGV-0021460_64	UniRef90	UniRef90_A0A6G0G3C8	Phage portal protein	NA
UHGV-0021460_64	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0021460_64	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0021460_65	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0021460_65	UniRef90	UniRef90_A0A415SRG6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0021460_65	eggNOG-mapper	742727.HMPREF9447_04827	Terminase-like family	NA
UHGV-0021460_65	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0021460_65	COG	COG5362	Phage terminase large subunit	NA
UHGV-0021460_65	Structural annotation	PF05203, PF04466, PF20441, MF_04145, MF_01420, NF005852, TIGR01547, COG1372, COG5323	NA	NA
UHGV-0021460_66	PHROG	phrog_5824	NA	unknown function
UHGV-0021460_66	eggNOG-mapper	742767.HMPREF9456_03321	NA	NA
UHGV-0021460_68	PHROG	phrog_29	major head protein	head and packaging
UHGV-0021460_68	UniRef90	UniRef90_A0A2V3PU71	Major capsid protein E	NA
UHGV-0021460_68	eggNOG-mapper	742727.HMPREF9447_04831	NA	NA
UHGV-0021460_68	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0021460_68	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0021460_69	eggNOG-mapper	742727.HMPREF9447_04832	NA	NA
UHGV-0021460_69	Structural annotation	PF20449	NA	NA
UHGV-0021460_70	Structural annotation	PF19586	NA	NA
UHGV-0021460_72	Structural annotation	PF06141	NA	NA
UHGV-0021460_73	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0021460_74	eggNOG-mapper	742727.HMPREF9447_04837	NA	NA
UHGV-0021460_74	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0021460_76	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0021460_76	UniRef90	UniRef90_A0A6G0G335	TMP_3 domain-containing protein	NA
UHGV-0021460_76	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-0021460_76	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0021460_76	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0021460_76	COG	COG1511	NA	NA
UHGV-0021460_76	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0021460_77	eggNOG-mapper	1236504.HMPREF2132_11265	NA	NA
UHGV-0021460_77	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0021460_78	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0021460_78	PHROG	phrog_19846	NA	unknown function
UHGV-0021460_78	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0021460_78	COG	COG4926	Phage-related protein	NA