UHGV-0021890

Genome information

Genome length 36,694 bps

CDS count 44

Completeness 95.02% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021890
vOTU ID	vOTU-009639
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_22_2354__NODE_1226_length_36694_cov_4.206571
BioSample	SAMEA4766258
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.6
Jumbo phage	No

Genome content
Genome length	36,694 bps
GC content	60.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.71%
Average CDS length	751.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021890_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0021890_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0021890_1	UniRef90	UniRef90_A0A3D4D7M3	HTH cro/C1-type domain-containing protein	NA
UHGV-0021890_1	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0021890_1	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0021890_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0021890_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0021890_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0021890_3	UniRef90	UniRef90_G4KP73	Putative site-specific recombinase	NA
UHGV-0021890_3	eggNOG-mapper	693746.OBV_21880	Resolvase, N terminal domain	NA
UHGV-0021890_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0021890_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0021890_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0021890_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0021890_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0021890_5	PHROG	phrog_14770	NA	unknown function
UHGV-0021890_5	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-0021890_5	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0021890_5	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0021890_5	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0021890_6	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0021890_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0021890_7	PHROG	phrog_1129	holin	lysis
UHGV-0021890_7	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0021890_7	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0021890_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0021890_7	Structural annotation	PF06946	NA	NA
UHGV-0021890_8	PHROG	phrog_1863	NA	unknown function
UHGV-0021890_8	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0021890_8	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0021890_9	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0021890_9	Structural annotation	PF14600	NA	NA
UHGV-0021890_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0021890_12	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0021890_12	UniRef90	UniRef90_A0A8D9PDI4	Collagen I alpha 1	NA
UHGV-0021890_12	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0021890_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0021890_12	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0021890_13	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0021890_13	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0021890_13	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0021890_14	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0021890_14	Structural annotation	PF20387	NA	NA
UHGV-0021890_15	PHROG	phrog_371	major head protein	head and packaging
UHGV-0021890_15	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0021890_15	eggNOG-mapper	693746.OBV_23890	NA	NA
UHGV-0021890_15	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0021890_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0021890_16	PHROG	phrog_24113	NA	unknown function
UHGV-0021890_16	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0021890_16	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0021890_17	PHROG	phrog_35275	NA	unknown function
UHGV-0021890_17	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0021890_19	Structural annotation	NF007241	NA	NA
UHGV-0021890_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0021890_20	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0021890_20	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0021890_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0021890_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0021890_21	UniRef90	UniRef90_A0A4R2M2T5	Phage terminase small subunit	NA
UHGV-0021890_21	eggNOG-mapper	1462526.BN990_03868	Terminase small subunit	NA
UHGV-0021890_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0021890_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0021890_22	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0021890_22	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0021890_22	UniRef90	UniRef90_UPI00130EBAF4	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0021890_22	eggNOG-mapper	641112.ACOK01000116_gene2618	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0021890_22	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0021890_22	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0021890_22	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0021890_23	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0021890_23	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0021890_23	UniRef90	UniRef90_A0A810Q7W6	HicB family protein	NA
UHGV-0021890_23	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0021890_23	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0021890_23	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0021890_23	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0021890_24	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-0021890_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0021890_25	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0021890_25	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0021890_26	Structural annotation	NF040595	NA	NA
UHGV-0021890_27	Structural annotation	PF09228	NA	NA
UHGV-0021890_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0021890_28	PHROG	phrog_435	endolysin	lysis
UHGV-0021890_28	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0021890_28	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0021890_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0021890_28	Pfam	PF05036	SPOR domain	SPOR
UHGV-0021890_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0021890_28	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0021890_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0021890_30	UniRef90	UniRef90_R6TQ60	Putative terminase large subunit	NA
UHGV-0021890_30	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0021890_30	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0021890_30	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0021890_34	PHROG	phrog_15609	NA	unknown function
UHGV-0021890_34	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-0021890_34	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-0021890_34	Pfam	PF11300	NA	DUF3102
UHGV-0021890_34	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0021890_34	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0021890_35	PHROG	phrog_8470	NA	unknown function
UHGV-0021890_35	UniRef90	UniRef90_UPI00195E492B	PcfJ domain-containing protein	NA
UHGV-0021890_35	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0021890_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0021890_35	Structural annotation	PF14284	NA	NA
UHGV-0021890_36	PHROG	phrog_38338	NA	unknown function
UHGV-0021890_36	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0021890_40	Structural annotation	PF15591, MF_01549, NF007981	NA	NA
UHGV-0021890_41	eggNOG-mapper	693746.OBV_21850	NA	NA
UHGV-0021890_42	Pfam	PF03412	Peptidase C39 family	Peptidase_C39
UHGV-0021890_44	UniRef90	UniRef90_UPI0008FC7A98	helix-turn-helix transcriptional regulator	NA
UHGV-0021890_44	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0021890_44	Pfam	PF05043	Mga helix-turn-helix domain	Mga
UHGV-0021890_44	Structural annotation	PF05339, NF041951, COG1396	NA	NA