UHGV-0021957

Genome information

vOTU vOTU-031962

Genome length 14,003 bps

CDS count 19

Completeness 63.43% (medium-quality)

geNomad score 0.9633

Prediction confidence Confident

Genome information
Genome ID	UHGV-0021957
vOTU ID	vOTU-031962
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_13_1776__NODE_10045_length_14003_cov_6.723539
BioSample	SAMEA4766035
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9633
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.15
Jumbo phage	No

Genome content
Genome length	14,003 bps
GC content	30.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	95.09%
Average CDS length	703.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0021957_6	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0021957_6	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0021957_6	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0021957_6	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0021957_6	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0021957_6	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0021957_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0021957_10	UniRef90	UniRef90_P11014	DNA packaging protein	NA
UHGV-0021957_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0021957_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0021957_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0021957_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0021957_13	UniRef90	UniRef90_UPI000D1EFE69	phage head protein	NA
UHGV-0021957_13	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0021957_13	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0021957_14	PHROG	phrog_2248	tail protein	tail
UHGV-0021957_14	UniRef90	UniRef90_Q04395	Tail knob protein gp9	NA
UHGV-0021957_14	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0021957_14	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0021957_14	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0021957_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0021957_15	PHROG	phrog_2038	upper collar connector	connector
UHGV-0021957_15	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-0021957_15	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0021957_15	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0021957_15	Structural annotation	PF05352, TIGR01537, COG4695	NA	NA
UHGV-0021957_16	PHROG	phrog_5472	lower collar	tail
UHGV-0021957_17	PHROG	phrog_199	holin	lysis
UHGV-0021957_17	UniRef90	UniRef90_A0A1I3QGI7	Toxin secretion/phage lysis holin	NA
UHGV-0021957_17	eggNOG-mapper	1305836.AXVE01000003_gene2375	Bacteriophage holin family	NA
UHGV-0021957_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0021957_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0021957_17	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0021957_18	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0021957_18	COG	COG1388	LysM repeat	NA