UHGV-0022007

Genome information

Genome length 32,261 bps

CDS count 55

Completeness 95.06% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0022007
vOTU ID	vOTU-011718
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_I_3_1743__NODE_2006_length_32261_cov_10.373944
BioSample	SAMEA4766023
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.97
Jumbo phage	No

Genome content
Genome length	32,261 bps
GC content	40.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.27%
Average CDS length	555.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0022007_1	KOfam	K14059	int; integrase	NA
UHGV-0022007_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0022007_1	UniRef90	UniRef90_UPI000C82FAA8	site-specific integrase	NA
UHGV-0022007_1	eggNOG-mapper	679192.HMPREF9013_1328	Phage integrase family	NA
UHGV-0022007_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0022007_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0022007_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0022007_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0022007_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0022007_2	UniRef90	UniRef90_A0A3N0HYP7	Helix-turn-helix domain-containing protein	NA
UHGV-0022007_2	eggNOG-mapper	1504823.CCMM01000010_gene1370	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0022007_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022007_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0022007_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0022007_2	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0022007_3	UniRef90	UniRef90_A0A7X2NQM5	NA	NA
UHGV-0022007_3	eggNOG-mapper	642492.Clole_2800	NA	NA
UHGV-0022007_3	Pfam	PF05339	NA	DUF739
UHGV-0022007_3	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0022007_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0022007_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0022007_9	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0022007_9	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0022007_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0022007_9	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0022007_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0022007_11	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0022007_11	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0022007_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0022007_12	PHROG	phrog_1389	NA	unknown function
UHGV-0022007_12	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0022007_12	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0022007_13	PHROG	phrog_7566	NA	unknown function
UHGV-0022007_13	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0022007_14	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0022007_14	UniRef90	UniRef90_A0A7X5CRI6	Phage_rep_org_N domain-containing protein	NA
UHGV-0022007_14	eggNOG-mapper	626523.GCWU000342_01039	DnaD domain protein	NA
UHGV-0022007_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0022007_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0022007_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0022007_17	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0022007_17	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0022007_17	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0022007_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0022007_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022007_22	UniRef90	UniRef90_UPI001431667E	single-stranded DNA-binding protein	NA
UHGV-0022007_22	eggNOG-mapper	1118057.CAGX01000020_gene1635	Single-stranded DNA-binding protein	NA
UHGV-0022007_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0022007_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0022007_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0022007_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0022007_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0022007_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0022007_23	UniRef90	UniRef90_UPI0018A04B6B	NA	NA
UHGV-0022007_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0022007_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0022007_23	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0022007_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0022007_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0022007_24	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-0022007_24	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0022007_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0022007_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0022007_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0022007_24	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0022007_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0022007_26	PHROG	phrog_29775	NA	unknown function
UHGV-0022007_26	UniRef90	UniRef90_A7VTB2	Phage terminase, large subunit, PBSX family	NA
UHGV-0022007_26	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0022007_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0022007_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0022007_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0022007_26	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0022007_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0022007_27	UniRef90	UniRef90_UPI001898C571	phage portal protein	NA
UHGV-0022007_27	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0022007_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0022007_27	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0022007_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0022007_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0022007_28	UniRef90	UniRef90_UPI001E5C8078	phage minor capsid protein	NA
UHGV-0022007_28	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0022007_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0022007_28	COG	COG2369	NA	NA
UHGV-0022007_28	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0022007_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-0022007_33	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0022007_33	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0022007_33	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0022007_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0022007_34	UniRef90	UniRef90_A0A023CQT5	Protein gp8	NA
UHGV-0022007_34	eggNOG-mapper	1295642.H839_08319	NA	NA
UHGV-0022007_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0022007_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0022007_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0022007_36	UniRef90	UniRef90_A0A2K4QBZ3	Putative Minor capsid protein	NA
UHGV-0022007_36	eggNOG-mapper	1395513.P343_12640	Minor capsid protein	NA
UHGV-0022007_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0022007_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0022007_37	Structural annotation	PF12691	NA	NA
UHGV-0022007_38	PHROG	phrog_820	major tail protein	tail
UHGV-0022007_38	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0022007_38	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0022007_38	COG	COG5492	NA	NA
UHGV-0022007_38	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0022007_40	PHROG	phrog_706	NA	unknown function
UHGV-0022007_40	UniRef90	UniRef90_A0A143ZUS4	Bacteriophage Gp15 protein	NA
UHGV-0022007_40	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-0022007_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0022007_40	Structural annotation	PF06854	NA	NA
UHGV-0022007_41	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0022007_41	UniRef90	UniRef90_A0A3A6E908	TMP_3 domain-containing protein	NA
UHGV-0022007_41	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-0022007_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0022007_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0022007_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0022007_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0022007_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0022007_42	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0022007_42	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0022007_43	PHROG	phrog_5555	tail protein	tail
UHGV-0022007_43	UniRef90	UniRef90_UPI00189BED7C	phage tail protein	NA
UHGV-0022007_43	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-0022007_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0022007_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0022007_43	COG	COG4926	Phage-related protein	NA
UHGV-0022007_43	Structural annotation	PF14594, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0022007_44	PHROG	phrog_21765	NA	unknown function
UHGV-0022007_44	UniRef90	UniRef90_A0A1C5W6G3	BppU_N domain-containing protein	NA
UHGV-0022007_44	eggNOG-mapper	661087.HMPREF1008_00877	Collagen triple helix repeat (20 copies)	NA
UHGV-0022007_44	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0022007_49	eggNOG-mapper	552396.HMPREF0863_01651	lysozyme activity	NA
UHGV-0022007_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0022007_50	PHROG	phrog_918	NA	unknown function
UHGV-0022007_50	UniRef90	UniRef90_UPI001071C879	NA	NA
UHGV-0022007_50	eggNOG-mapper	1158614.I592_01104	NA	NA
UHGV-0022007_50	Pfam	PF19791	NA	DUF6275
UHGV-0022007_50	Structural annotation	PF19791	NA	NA
UHGV-0022007_51	PHROG	phrog_881	holin	lysis
UHGV-0022007_51	UniRef90	UniRef90_UPI001CF8C011	phage holin	NA
UHGV-0022007_51	eggNOG-mapper	1437603.BMON_0122	Putative phage holin Dp-1	NA
UHGV-0022007_51	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0022007_51	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0022007_52	PHROG	phrog_37604	NA	unknown function
UHGV-0022007_52	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0022007_55	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0022007_55	PHROG	phrog_2577	transposase	integration and excision
UHGV-0022007_55	UniRef90	UniRef90_UPI000D55770B	IS200/IS605 family transposase	NA
UHGV-0022007_55	eggNOG-mapper	1347086.CCBA010000030_gene225	Transposase IS200 like	NA
UHGV-0022007_55	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0022007_55	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0022007_55	COG	COG1943	REP element-mobilizing transposase RayT	NA