UHGV-0022637

Genome information

vOTU vOTU-012031

Genome length 42,194 bps

CDS count 57

Completeness 97.78% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0022637
vOTU ID	vOTU-012031
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_15_1738__NODE_1558_length_42194_cov_10.680295
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.77
Jumbo phage	No

Genome content
Genome length	42,194 bps
GC content	56.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.36%
Average CDS length	664.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0022637_1	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0022637_1	PHROG	phrog_4433	NA	unknown function
UHGV-0022637_1	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0022637_1	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0022637_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0022637_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0022637_2	Structural annotation	PF17259	NA	NA
UHGV-0022637_3	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0022637_3	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0022637_5	UniRef90	UniRef90_UPI0002F09A0C	helix-turn-helix domain-containing protein	NA
UHGV-0022637_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022637_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0022637_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0022637_6	UniRef90	UniRef90_UPI000B35D4B7	helix-turn-helix transcriptional regulator	NA
UHGV-0022637_6	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0022637_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022637_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0022637_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0022637_8	PHROG	phrog_14556	NA	unknown function
UHGV-0022637_8	eggNOG-mapper	479437.Elen_0688	competence protein COMEC	NA
UHGV-0022637_8	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0022637_9	KOfam	K14059	int; integrase	NA
UHGV-0022637_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0022637_9	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0022637_9	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0022637_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0022637_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0022637_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0022637_12	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0022637_14	PHROG	phrog_15863	NA	unknown function
UHGV-0022637_14	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0022637_14	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0022637_14	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0022637_15	Pfam	PF08681	NA	DUF1778
UHGV-0022637_15	Structural annotation	PF03869, NF040976, COG4453	NA	NA
UHGV-0022637_17	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0022637_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0022637_17	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0022637_17	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0022637_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0022637_17	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0022637_19	PHROG	phrog_35275	NA	unknown function
UHGV-0022637_19	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0022637_20	PHROG	phrog_371	major head protein	head and packaging
UHGV-0022637_20	UniRef90	UniRef90_A0A1Y4TDW7	Mu-like_gpT domain-containing protein	NA
UHGV-0022637_20	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0022637_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0022637_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-0022637_22	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0022637_22	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0022637_23	PHROG	phrog_13046	NA	unknown function
UHGV-0022637_23	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0022637_23	Structural annotation	PF20387	NA	NA
UHGV-0022637_24	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0022637_24	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0022637_24	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0022637_25	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0022637_27	UniRef90	UniRef90_A0A1C5MZC0	NA	NA
UHGV-0022637_27	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0022637_27	Structural annotation	PF19789	NA	NA
UHGV-0022637_28	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0022637_28	PHROG	phrog_7698	endolysin	lysis
UHGV-0022637_28	UniRef90	UniRef90_E5DTQ2	Putative muramidase	NA
UHGV-0022637_28	eggNOG-mapper	1410624.JNKK01000045_gene544	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0022637_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0022637_28	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0022637_28	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0022637_28	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0022637_29	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0022637_30	PHROG	phrog_13256	NA	unknown function
UHGV-0022637_30	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0022637_32	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0022637_32	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0022637_33	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0022637_33	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0022637_36	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0022637_37	Structural annotation	PF08281, MF_00674, TIGR01636	NA	NA
UHGV-0022637_41	PHROG	phrog_9958	NA	unknown function
UHGV-0022637_41	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0022637_41	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0022637_41	Structural annotation	PF19789	NA	NA
UHGV-0022637_42	Structural annotation	TIGR03826	NA	NA
UHGV-0022637_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022637_44	Structural annotation	PF01381, PF08667, MF_00535, NF041951, NF007408, COG1476, COG3655	NA	NA
UHGV-0022637_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0022637_45	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0022637_45	UniRef90	UniRef90_A0A379C663	Holliday junction resolvase	NA
UHGV-0022637_45	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0022637_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0022637_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0022637_46	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0022637_46	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0022637_46	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0022637_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0022637_46	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0022637_48	PHROG	phrog_9804	NA	unknown function
UHGV-0022637_48	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0022637_48	Structural annotation	PF11417	NA	NA
UHGV-0022637_49	PHROG	phrog_16304	NA	unknown function
UHGV-0022637_49	UniRef90	UniRef90_UPI001874F31C	DnaD domain protein	NA
UHGV-0022637_49	eggNOG-mapper	411476.BACOVA_03891	DnaD domain protein	NA
UHGV-0022637_49	Pfam	PF19808	NA	DUF6291
UHGV-0022637_49	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0022637_49	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0022637_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0022637_49	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0022637_50	PHROG	phrog_4973	NA	unknown function
UHGV-0022637_50	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0022637_50	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0022637_50	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0022637_50	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0022637_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0022637_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022637_51	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0022637_51	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0022637_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0022637_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0022637_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0022637_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0022637_51	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0022637_52	PHROG	phrog_7566	NA	unknown function
UHGV-0022637_52	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0022637_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0022637_53	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0022637_53	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0022637_53	Structural annotation	PF05772	NA	NA
UHGV-0022637_54	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0022637_54	UniRef90	UniRef90_UPI0009E55993	NA	NA
UHGV-0022637_54	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0022637_54	Pfam	PF06378	NA	DUF1071
UHGV-0022637_54	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0022637_57	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0022637_57	PHROG	phrog_27197	NA	unknown function
UHGV-0022637_57	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0022637_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0022637_57	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0022637_57	Structural annotation	NF007410	NA	NA