UHGV-0022711

Genome information

vOTU vOTU-012035

Genome length 37,274 bps

CDS count 64

Completeness 91.02% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0022711
vOTU ID	vOTU-012035
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_1_1963__NODE_1351_length_37274_cov_5.456757
BioSample	SAMEA4766131
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.31
Jumbo phage	No

Genome content
Genome length	37,274 bps
GC content	33.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.71%
Average CDS length	532.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0022711_2	UniRef90	UniRef90_UPI00096A7D52	helix-turn-helix domain-containing protein	NA
UHGV-0022711_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0022711_2	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0022711_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0022711_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0022711_3	UniRef90	UniRef90_A0A3D3W9W9	HTH cro/C1-type domain-containing protein	NA
UHGV-0022711_3	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-0022711_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0022711_3	COG	COG1426	NA	NA
UHGV-0022711_4	UniRef90	UniRef90_A0A7X2N3V1	Abi family protein	NA
UHGV-0022711_4	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0022711_4	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0022711_5	KOfam	K14059	int; integrase	NA
UHGV-0022711_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0022711_5	UniRef90	UniRef90_UPI001436B14E	site-specific integrase	NA
UHGV-0022711_5	eggNOG-mapper	1158606.I579_02177	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0022711_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0022711_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0022711_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0022711_6	KOfam	K07172	mazE, chpAI; antitoxin MazE	NA
UHGV-0022711_6	PHROG	phrog_4324	NA	unknown function
UHGV-0022711_6	UniRef90	UniRef90_UPI00131428A7	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0022711_6	eggNOG-mapper	1497679.EP56_09585	SpoVT / AbrB like domain	NA
UHGV-0022711_6	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0022711_6	COG	COG2336	Antitoxin component MazE of the MazEF toxin-antitoxin module	NA
UHGV-0022711_6	Structural annotation	PF04014, MF_01193, NF008463, COG2336	NA	NA
UHGV-0022711_7	PHROG	phrog_1281	NA	unknown function
UHGV-0022711_7	UniRef90	UniRef90_A8RCY4	NA	NA
UHGV-0022711_7	eggNOG-mapper	428127.EUBDOL_01537	NA	NA
UHGV-0022711_7	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0022711_7	COG	COG3600	NA	NA
UHGV-0022711_7	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0022711_8	PHROG	phrog_37604	NA	unknown function
UHGV-0022711_8	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0022711_9	PHROG	phrog_881	holin	lysis
UHGV-0022711_9	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0022711_9	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0022711_9	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0022711_9	Structural annotation	PF16938	NA	NA
UHGV-0022711_10	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0022711_10	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0022711_14	PHROG	phrog_6779	tail protein	tail
UHGV-0022711_14	eggNOG-mapper	1158601.I585_04168	NA	NA
UHGV-0022711_15	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0022711_15	PHROG	phrog_3088	amidase	lysis
UHGV-0022711_15	UniRef90	UniRef90_A0A7U9GPE9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0022711_15	eggNOG-mapper	552525.B5LPS9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0022711_15	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0022711_16	PHROG	phrog_7064	tail protein	tail
UHGV-0022711_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0022711_17	PHROG	phrog_13564	minor tail protein	tail
UHGV-0022711_17	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0022711_17	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0022711_18	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0022711_18	UniRef90	UniRef90_UPI0008A51EA0	phage tail tape measure protein	NA
UHGV-0022711_18	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0022711_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0022711_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0022711_18	COG	COG1340	NA	NA
UHGV-0022711_18	Structural annotation	PF10145, PF16746, TIGR01760	NA	NA
UHGV-0022711_20	PHROG	phrog_88	major tail protein	tail
UHGV-0022711_20	UniRef90	UniRef90_U2KWM8	Phage major tail protein, phi13 family	NA
UHGV-0022711_20	eggNOG-mapper	411473.RUMCAL_01152	phage major tail protein, phi13 family	NA
UHGV-0022711_20	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0022711_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0022711_20	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0022711_21	UniRef90	UniRef90_R6TDA5	Prophage pi2 protein 37	NA
UHGV-0022711_21	eggNOG-mapper	1415774.U728_1249	NA	NA
UHGV-0022711_22	eggNOG-mapper	1035184.HMPREF1042_1218	NA	NA
UHGV-0022711_22	Structural annotation	PF05657	NA	NA
UHGV-0022711_23	PHROG	phrog_19734	NA	unknown function
UHGV-0022711_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0022711_24	PHROG	phrog_749	NA	unknown function
UHGV-0022711_24	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0022711_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0022711_25	UniRef90	UniRef90_R9K3K4	HK97 family phage major capsid protein	NA
UHGV-0022711_25	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0022711_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0022711_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0022711_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0022711_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0022711_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0022711_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0022711_26	UniRef90	UniRef90_UPI001C8C44A6	Clp protease ClpP	NA
UHGV-0022711_26	eggNOG-mapper	469617.FUAG_01838	Serine dehydrogenase proteinase	NA
UHGV-0022711_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0022711_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0022711_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0022711_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0022711_27	UniRef90	UniRef90_A0A252F2R2	Phage portal protein	NA
UHGV-0022711_27	eggNOG-mapper	1220589.CD32_00790	portal protein	NA
UHGV-0022711_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0022711_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0022711_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0022711_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0022711_28	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-0022711_28	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0022711_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0022711_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0022711_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0022711_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0022711_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0022711_30	UniRef90	UniRef90_UPI00073F2BD4	NA	NA
UHGV-0022711_30	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0022711_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0022711_34	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0022711_34	UniRef90	UniRef90_UPI001C0C490B	ArdC-like ssDNA-binding domain-containing protein	NA
UHGV-0022711_34	eggNOG-mapper	411483.FAEPRAA2165_00074	YodL-like	NA
UHGV-0022711_34	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0022711_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0022711_34	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0022711_38	UniRef90	UniRef90_A0A1I0GDZ0	Peptidase_M78 domain-containing protein	NA
UHGV-0022711_38	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0022711_38	Structural annotation	PF13058, MF_00745	NA	NA
UHGV-0022711_39	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0022711_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0022711_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022711_40	UniRef90	UniRef90_UPI001431667E	single-stranded DNA-binding protein	NA
UHGV-0022711_40	eggNOG-mapper	1295642.H839_08184	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0022711_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0022711_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0022711_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0022711_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0022711_40	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0022711_41	PHROG	phrog_236	nucleotide kinase	other
UHGV-0022711_41	UniRef90	UniRef90_UPI000AC4FB2A	NA	NA
UHGV-0022711_41	eggNOG-mapper	673376.F2VHW0_9CAUD	NA	NA
UHGV-0022711_41	Pfam	PF11753	NA	DUF3310
UHGV-0022711_41	Structural annotation	PF11753	NA	NA
UHGV-0022711_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0022711_42	UniRef90	UniRef90_UPI0004A0D626	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0022711_42	eggNOG-mapper	33876.JNXY01000004_gene1782	sulfate reduction	NA
UHGV-0022711_42	PADLOC	SspD_00001	SspD	SSP
UHGV-0022711_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0022711_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0022711_42	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0022711_44	PHROG	phrog_2715	NA	unknown function
UHGV-0022711_44	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0022711_44	Structural annotation	PF18406	NA	NA
UHGV-0022711_46	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0022711_46	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0022711_47	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022711_47	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0022711_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0022711_50	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0022711_50	UniRef90	UniRef90_A0A1Y4LYP2	Methyltransferase	NA
UHGV-0022711_50	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0022711_50	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0022711_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0022711_50	COG	COG0863	DNA modification methylase	NA
UHGV-0022711_50	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0022711_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0022711_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0022711_54	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0022711_54	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0022711_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0022711_54	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0022711_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0022711_54	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0022711_55	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0022711_55	UniRef90	UniRef90_UPI001D07DF54	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0022711_55	eggNOG-mapper	1244083.CSUNSWCD_1478	NA	NA
UHGV-0022711_55	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0022711_55	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0022711_55	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0022711_56	PHROG	phrog_4973	NA	unknown function
UHGV-0022711_56	UniRef90	UniRef90_UPI000E3485C3	helix-turn-helix domain-containing protein	NA
UHGV-0022711_56	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0022711_56	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0022711_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0022711_57	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0022711_57	UniRef90	UniRef90_A0A3E3E0Z5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0022711_57	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0022711_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0022711_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0022711_57	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0022711_58	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0022711_58	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0022711_58	Structural annotation	PF05772	NA	NA
UHGV-0022711_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0022711_59	UniRef90	UniRef90_A0A7C6TWW8	Siphovirus Gp157 family protein	NA
UHGV-0022711_59	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0022711_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0022711_60	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0022711_60	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0022711_60	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0022711_60	Pfam	PF04404	ERF superfamily	ERF
UHGV-0022711_60	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0022711_63	UniRef90	UniRef90_A0A7X8X940	DarA_C domain-containing protein	NA
UHGV-0022711_63	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0022711_63	Structural annotation	PF18789	NA	NA