UHGV-0022805

Genome information

vOTU vOTU-020648

Genome length 44,316 bps

CDS count 63

Completeness 86.49% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0022805
vOTU ID	vOTU-020648
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_3_2141__NODE_1640_length_44316_cov_11.923100
BioSample	SAMEA4766164
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.47
Jumbo phage	No

Genome content
Genome length	44,316 bps
GC content	62.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	88.89%
Average CDS length	630.57 bps
tRNA count	10
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0022805_1	KOfam	K14059	int; integrase	NA
UHGV-0022805_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0022805_1	UniRef90	UniRef90_UPI001106575D	tyrosine-type recombinase/integrase	NA
UHGV-0022805_1	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-0022805_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0022805_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0022805_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0022805_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0022805_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0022805_2	UniRef90	UniRef90_A0A4S4G2F2	Helix-turn-helix transcriptional regulator	NA
UHGV-0022805_2	eggNOG-mapper	1121866.AUGK01000014_gene2081	Helix-turn-helix	NA
UHGV-0022805_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022805_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0022805_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0022805_3	UniRef90	UniRef90_UPI00189C3640	helix-turn-helix domain-containing protein	NA
UHGV-0022805_3	eggNOG-mapper	742735.HMPREF9467_01754	Helix-turn-helix XRE-family like proteins	NA
UHGV-0022805_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0022805_3	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0022805_4	UniRef90	UniRef90_UPI0003AD8339	helix-turn-helix domain-containing protein	NA
UHGV-0022805_4	Pfam	PF08667	BetR domain	BetR
UHGV-0022805_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0022805_5	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0022805_5	PHROG	phrog_200	lipoprotein	other
UHGV-0022805_5	UniRef90	UniRef90_A0A173XJF0	Putative virion core protein (Lumpy skin disease virus)	NA
UHGV-0022805_5	eggNOG-mapper	76636.JOEC01000002_gene2577	prohibitin homologues	NA
UHGV-0022805_5	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0022805_5	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0022805_7	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0022805_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0022805_8	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0022805_8	UniRef90	UniRef90_A0A7X7SYA0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0022805_8	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0022805_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0022805_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0022805_10	UniRef90	UniRef90_UPI00110603B3	YqaJ viral recombinase family protein	NA
UHGV-0022805_10	eggNOG-mapper	1504822.CCNO01000015_gene597	YqaJ viral recombinase family	NA
UHGV-0022805_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0022805_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0022805_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0022805_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0022805_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0022805_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0022805_11	UniRef90	UniRef90_UPI0014858083	recombinase RecT	NA
UHGV-0022805_11	eggNOG-mapper	1504822.CCNO01000015_gene598	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0022805_11	Pfam	PF03837	RecT family	RecT
UHGV-0022805_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0022805_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0022805_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0022805_12	UniRef90	UniRef90_A0A6N3DMH1	30S ribosomal protein S13	NA
UHGV-0022805_12	eggNOG-mapper	1504822.CCNO01000015_gene823	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-0022805_12	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0022805_12	COG	COG0099	Ribosomal protein S13	NA
UHGV-0022805_12	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0022805_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0022805_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022805_13	UniRef90	UniRef90_R7ANG4	Single-stranded DNA-binding protein	NA
UHGV-0022805_13	eggNOG-mapper	742722.HMPREF9463_00041	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0022805_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0022805_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0022805_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0022805_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0022805_15	Structural annotation	PF04545, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-0022805_16	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0022805_16	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0022805_16	UniRef90	UniRef90_UPI001E3E2DB2	dUTP diphosphatase	NA
UHGV-0022805_16	eggNOG-mapper	1504822.CCNO01000015_gene601	dUTP diphosphatase activity	NA
UHGV-0022805_16	Pfam	PF00692	dUTPase	dUTPase
UHGV-0022805_16	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0022805_16	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0022805_16	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0022805_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022805_17	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0022805_25	PHROG	phrog_17662	NA	unknown function
UHGV-0022805_25	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0022805_25	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0022805_25	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0022805_25	Structural annotation	PF04055, MF_03129, TIGR04317, COG0320	NA	NA
UHGV-0022805_28	UniRef90	UniRef90_UPI001105C552	helix-turn-helix domain-containing protein	NA
UHGV-0022805_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0022805_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0022805_31	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0022805_31	UniRef90	UniRef90_UPI001105FF6B	replisome organizer	NA
UHGV-0022805_31	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0022805_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0022805_31	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0022805_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0022805_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0022805_32	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-0022805_32	eggNOG-mapper	903814.ELI_1585	NA	NA
UHGV-0022805_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0022805_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0022805_32	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-0022805_33	UniRef90	UniRef90_UPI0018998A26	helix-turn-helix transcriptional regulator	NA
UHGV-0022805_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0022805_36	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0022805_37	PHROG	phrog_16683	NA	unknown function
UHGV-0022805_37	UniRef90	UniRef90_UPI000C7E58C8	amidoligase family protein	NA
UHGV-0022805_37	eggNOG-mapper	641112.ACOK01000099_gene354	NA	NA
UHGV-0022805_37	Structural annotation	PF12224, PF15591, MF_01609, NF010044, COG2170, COG2139	NA	NA
UHGV-0022805_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0022805_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0022805_38	UniRef90	UniRef90_UPI001D0B09C7	HNH endonuclease	NA
UHGV-0022805_38	eggNOG-mapper	927704.SELR_11230	HNH endonuclease	NA
UHGV-0022805_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0022805_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0022805_40	UniRef90	UniRef90_UPI0004294E15	terminase large subunit	NA
UHGV-0022805_40	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-0022805_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0022805_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0022805_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0022805_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0022805_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0022805_41	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-0022805_41	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-0022805_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0022805_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0022805_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0022805_42	KOfam	K06904	NA	NA
UHGV-0022805_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0022805_42	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-0022805_42	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-0022805_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0022805_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0022805_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0022805_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0022805_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0022805_43	UniRef90	UniRef90_A0A1Y4GX93	Phage major capsid protein	NA
UHGV-0022805_43	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0022805_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0022805_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0022805_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0022805_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0022805_44	PHROG	phrog_5223	neck protein	connector
UHGV-0022805_44	UniRef90	UniRef90_UPI00157A3953	head-tail connector protein	NA
UHGV-0022805_44	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-0022805_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0022805_45	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0022805_45	eggNOG-mapper	1444310.JANV01000004_gene2678	head-tail adaptor	NA
UHGV-0022805_45	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0022805_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0022805_46	UniRef90	UniRef90_UPI00047AA654	HK97 gp10 family phage protein	NA
UHGV-0022805_46	eggNOG-mapper	658655.HMPREF0988_00539	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0022805_46	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0022805_48	PHROG	phrog_88	major tail protein	tail
UHGV-0022805_48	UniRef90	UniRef90_UPI00037579D7	tail protein	NA
UHGV-0022805_48	eggNOG-mapper	926561.KB900622_gene639	phage major tail protein, phi13 family	NA
UHGV-0022805_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0022805_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0022805_51	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0022805_51	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-0022805_51	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-0022805_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0022805_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0022805_51	COG	COG1340	NA	NA
UHGV-0022805_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0022805_52	UniRef90	UniRef90_C4F8I2	Fibronectin type III domain protein	NA
UHGV-0022805_52	eggNOG-mapper	521003.COLINT_02353	Fibronectin type 3 domain	NA
UHGV-0022805_52	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0022805_52	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-0022805_53	PHROG	phrog_1887	tail protein	tail
UHGV-0022805_53	eggNOG-mapper	1437610.BREU_1373	NA	NA
UHGV-0022805_53	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0022805_54	Structural annotation	PF16450, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0022805_55	eggNOG-mapper	742722.HMPREF9463_00258	NA	NA
UHGV-0022805_56	PHROG	phrog_19280	NA	unknown function
UHGV-0022805_56	UniRef90	UniRef90_A0A143WWR7	NA	NA
UHGV-0022805_56	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0022805_56	Pfam	PF19789	NA	DUF6273
UHGV-0022805_56	Structural annotation	PF19789	NA	NA
UHGV-0022805_57	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0022805_57	eggNOG-mapper	1226322.HMPREF1545_04032	NA	NA
UHGV-0022805_57	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0022805_58	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0022805_58	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0022805_58	UniRef90	UniRef90_UPI000DF7A728	RNA-directed DNA polymerase	NA
UHGV-0022805_58	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0022805_58	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0022805_58	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0022805_58	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0022805_58	Structural annotation	PF00078, MF_04073, TIGR04416, COG3344	NA	NA
UHGV-0022805_60	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0022805_61	PHROG	phrog_199	holin	lysis
UHGV-0022805_61	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-0022805_61	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0022805_61	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0022805_62	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0022805_62	PHROG	phrog_14048	endolysin	lysis
UHGV-0022805_62	UniRef90	UniRef90_UPI00189738D0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0022805_62	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-0022805_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0022805_62	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0022805_62	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0022805_63	Structural annotation	PF20037	NA	NA