UHGV-0023217

Genome information

Genome length 39,964 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0023217
vOTU ID	vOTU-068731
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_B_22_1164__NODE_1828_length_39964_cov_6.377291
BioSample	SAMEA4765624
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.54
Jumbo phage	No

Genome content
Genome length	39,964 bps
GC content	53.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	94.33%
Average CDS length	558.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0023217_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0023217_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0023217_1	UniRef90	UniRef90_A0A1Y3RMH9	Single-stranded DNA-binding protein	NA
UHGV-0023217_1	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0023217_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0023217_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0023217_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0023217_1	Structural annotation	PF00436, MF_00984, NF005242, COG2965	NA	NA
UHGV-0023217_2	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0023217_2	UniRef90	UniRef90_A0A1Y3RPZ6	NA	NA
UHGV-0023217_2	eggNOG-mapper	1158602.I590_00670	NA	NA
UHGV-0023217_2	Pfam	PF12684	NA	DUF3799
UHGV-0023217_2	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0023217_2	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0023217_3	PHROG	phrog_3657	NA	unknown function
UHGV-0023217_3	eggNOG-mapper	1071073.KI530540_gene3354	NA	NA
UHGV-0023217_6	Pfam	PF04448	NA	DUF551
UHGV-0023217_8	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0023217_8	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0023217_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0023217_13	UniRef90	UniRef90_UPI0018C81604	helix-turn-helix domain-containing protein	NA
UHGV-0023217_13	eggNOG-mapper	718252.FP2_06860	NA	NA
UHGV-0023217_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0023217_13	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0023217_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0023217_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0023217_14	UniRef90	UniRef90_UPI00047CA4D8	helix-turn-helix domain-containing protein	NA
UHGV-0023217_14	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0023217_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0023217_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0023217_14	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0023217_15	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0023217_15	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0023217_15	UniRef90	UniRef90_R5EQ83	FtsK domain-containing protein	NA
UHGV-0023217_15	eggNOG-mapper	1297617.JPJD01000010_gene2868	Ftsk_gamma	NA
UHGV-0023217_15	PADLOC	SspH_00004	SspH	SSP
UHGV-0023217_15	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0023217_15	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0023217_15	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0023217_17	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0023217_17	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0023217_18	KOfam	K14059	int; integrase	NA
UHGV-0023217_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0023217_18	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0023217_18	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0023217_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0023217_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0023217_18	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0023217_22	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0023217_23	PHROG	phrog_21357	endolysin	lysis
UHGV-0023217_23	UniRef90	UniRef90_A0A4D7AVW6	CHAP domain-containing protein	NA
UHGV-0023217_23	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0023217_23	Pfam	PF05257	CHAP domain	CHAP
UHGV-0023217_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0023217_23	COG	COG1388	LysM repeat	NA
UHGV-0023217_23	Structural annotation	PF01471, PF10030, TIGR02594, NF038080, COG3409, COG3942	NA	NA
UHGV-0023217_24	KOfam	K13023	CPN2; carboxypeptidase N regulatory subunit	NA
UHGV-0023217_24	PHROG	phrog_35892	NA	unknown function
UHGV-0023217_24	Pfam	PF01462	Leucine rich repeat N-terminal domain	LRRNT
UHGV-0023217_24	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0023217_24	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0023217_24	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0023217_26	PHROG	phrog_15594	NA	unknown function
UHGV-0023217_26	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0023217_27	PHROG	phrog_881	holin	lysis
UHGV-0023217_27	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0023217_27	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0023217_27	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0023217_27	Structural annotation	PF16938	NA	NA
UHGV-0023217_28	PHROG	phrog_937	hemolysin	other
UHGV-0023217_29	PHROG	phrog_372	tail protein	tail
UHGV-0023217_29	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-0023217_29	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0023217_29	Pfam	PF05895	NA	DUF859
UHGV-0023217_29	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0023217_30	PHROG	phrog_6616	tail protein	tail
UHGV-0023217_30	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0023217_30	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0023217_31	PHROG	phrog_1194	NA	unknown function
UHGV-0023217_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0023217_32	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0023217_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0023217_32	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0023217_32	COG	COG5412	Phage-related protein	NA
UHGV-0023217_33	PHROG	phrog_706	NA	unknown function
UHGV-0023217_33	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0023217_33	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0023217_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0023217_33	Structural annotation	PF06854	NA	NA
UHGV-0023217_34	PHROG	phrog_11299	NA	unknown function
UHGV-0023217_34	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0023217_34	Structural annotation	PF10666	NA	NA
UHGV-0023217_35	PHROG	phrog_3099	NA	unknown function
UHGV-0023217_35	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0023217_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0023217_36	PHROG	phrog_3266	tail completion	connector
UHGV-0023217_36	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0023217_36	Structural annotation	PF20765	NA	NA
UHGV-0023217_37	UniRef90	UniRef90_UPI00137AF39D	minor capsid protein	NA
UHGV-0023217_37	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0023217_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0023217_37	Structural annotation	PF11114	NA	NA
UHGV-0023217_38	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0023217_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0023217_39	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0023217_40	PHROG	phrog_212	major head protein	head and packaging
UHGV-0023217_40	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0023217_40	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0023217_40	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0023217_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0023217_41	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0023217_41	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0023217_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0023217_41	Structural annotation	PF06810	NA	NA
UHGV-0023217_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0023217_43	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0023217_43	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0023217_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0023217_43	COG	COG2369	NA	NA
UHGV-0023217_43	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0023217_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0023217_44	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0023217_44	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0023217_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0023217_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0023217_46	PHROG	phrog_10250	NA	unknown function
UHGV-0023217_46	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0023217_46	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0023217_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0023217_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0023217_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0023217_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0023217_47	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0023217_47	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0023217_47	Structural annotation	PF13542	NA	NA
UHGV-0023217_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0023217_48	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0023217_48	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0023217_48	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0023217_58	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0023217_58	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0023217_58	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0023217_58	Structural annotation	PF14354	NA	NA
UHGV-0023217_59	PHROG	phrog_38832	NA	unknown function
UHGV-0023217_59	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0023217_60	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0023217_60	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0023217_60	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0023217_60	Pfam	PF14359	NA	DUF4406
UHGV-0023217_60	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0023217_62	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0023217_62	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0023217_62	UniRef90	UniRef90_UPI000B87723F	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0023217_62	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0023217_62	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0023217_62	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0023217_62	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0023217_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0023217_62	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0023217_63	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0023217_63	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0023217_63	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0023217_63	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0023217_63	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0023217_63	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0023217_63	COG	COG0863	DNA modification methylase	NA
UHGV-0023217_63	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0023217_64	eggNOG-mapper	445972.ANACOL_01837	NA	NA
UHGV-0023217_65	PHROG	phrog_4433	NA	unknown function
UHGV-0023217_65	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0023217_65	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0023217_66	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0023217_66	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0023217_66	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0023217_66	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0023217_67	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0023217_67	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0023217_67	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0023217_68	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0023217_68	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0023217_68	UniRef90	UniRef90_A0A1C7FSG7	Single-stranded DNA-binding protein	NA
UHGV-0023217_68	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0023217_68	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0023217_68	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0023217_68	Structural annotation	NF006445	NA	NA