UHGV-0023333

Genome information

Genome length 42,702 bps

CDS count 72

Completeness 95.06% (high-quality)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-0023333
vOTU ID	vOTU-072996
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_21_1974__NODE_2013_length_42702_cov_14.408117
BioSample	SAMEA4766135
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.04
Jumbo phage	No

Genome content
Genome length	42,702 bps
GC content	32.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	88.69%
Average CDS length	529.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0023333_2	PHROG	phrog_20016	NA	unknown function
UHGV-0023333_2	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0023333_2	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0023333_2	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0023333_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0023333_3	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0023333_3	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0023333_9	PHROG	phrog_16164	NA	unknown function
UHGV-0023333_9	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0023333_10	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0023333_11	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0023333_12	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0023333_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0023333_13	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0023333_13	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0023333_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0023333_13	COG	COG4926	Phage-related protein	NA
UHGV-0023333_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0023333_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0023333_14	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0023333_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0023333_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0023333_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0023333_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0023333_15	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0023333_15	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0023333_15	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0023333_15	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-0023333_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0023333_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0023333_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0023333_15	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0023333_17	Structural annotation	PF11836	NA	NA
UHGV-0023333_18	PHROG	phrog_88	major tail protein	tail
UHGV-0023333_18	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0023333_18	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0023333_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0023333_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0023333_19	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0023333_19	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0023333_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0023333_20	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0023333_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0023333_21	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0023333_21	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0023333_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0023333_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0023333_22	PHROG	phrog_5223	neck protein	connector
UHGV-0023333_22	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0023333_22	Structural annotation	TIGR01560	NA	NA
UHGV-0023333_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0023333_23	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0023333_23	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0023333_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0023333_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0023333_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0023333_23	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0023333_24	KOfam	K06904	NA	NA
UHGV-0023333_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0023333_24	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0023333_24	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0023333_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0023333_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0023333_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0023333_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0023333_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0023333_25	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0023333_25	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0023333_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0023333_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0023333_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0023333_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0023333_26	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0023333_26	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0023333_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0023333_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0023333_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0023333_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0023333_27	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0023333_27	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0023333_27	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0023333_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0023333_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0023333_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0023333_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0023333_28	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0023333_28	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0023333_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0023333_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0023333_29	UniRef90	UniRef90_A0A395WDY7	HTH_8 domain-containing protein	NA
UHGV-0023333_29	eggNOG-mapper	1145276.T479_12115	Helix-turn-helix domain	NA
UHGV-0023333_30	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0023333_30	UniRef90	UniRef90_A0A395WEU5	Antirestriction protein ArdA	NA
UHGV-0023333_30	eggNOG-mapper	511680.BUTYVIB_00697	NA	NA
UHGV-0023333_30	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0023333_30	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0023333_30	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0023333_30	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0023333_36	PHROG	phrog_4525	NA	unknown function
UHGV-0023333_37	PHROG	phrog_2316	NA	unknown function
UHGV-0023333_37	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0023333_37	eggNOG-mapper	1007103.AFHW01000207_gene1752	NA	NA
UHGV-0023333_37	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0023333_38	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0023333_39	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0023333_39	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0023333_39	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0023333_40	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0023333_40	Pfam	PF07374	NA	DUF1492
UHGV-0023333_40	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0023333_44	Structural annotation	PF01104, NF041014	NA	NA
UHGV-0023333_47	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0023333_47	UniRef90	UniRef90_A0A413UEW6	SAM-dependent methyltransferase	NA
UHGV-0023333_47	eggNOG-mapper	1321779.HMPREF1984_00119	methyltransferase	NA
UHGV-0023333_47	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0023333_47	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0023333_47	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0023333_48	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0023333_49	PHROG	phrog_2715	NA	unknown function
UHGV-0023333_49	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0023333_49	Structural annotation	PF18406	NA	NA
UHGV-0023333_50	Structural annotation	PF17399	NA	NA
UHGV-0023333_54	PHROG	phrog_4601	NA	unknown function
UHGV-0023333_56	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0023333_56	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0023333_56	eggNOG-mapper	1196324.A374_08899	protein conserved in bacteria	NA
UHGV-0023333_56	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0023333_56	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0023333_56	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0023333_57	PHROG	phrog_236	nucleotide kinase	other
UHGV-0023333_57	UniRef90	UniRef90_A0A6J5KTZ9	SaV-like	NA
UHGV-0023333_57	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0023333_57	Pfam	PF11753	NA	DUF3310
UHGV-0023333_58	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0023333_61	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0023333_61	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0023333_61	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0023333_61	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0023333_61	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0023333_61	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0023333_61	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0023333_62	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0023333_62	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0023333_62	eggNOG-mapper	1194526.A284_08025	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0023333_62	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0023333_62	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0023333_62	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0023333_62	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0023333_64	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0023333_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0023333_64	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0023333_64	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0023333_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0023333_64	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0023333_64	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0023333_68	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0023333_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0023333_68	UniRef90	UniRef90_A0A395WA05	XRE family transcriptional regulator	NA
UHGV-0023333_68	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0023333_68	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0023333_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0023333_68	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0023333_69	UniRef90	UniRef90_A0A4R1RC20	Putative heavy-metal-binding protein	NA
UHGV-0023333_69	eggNOG-mapper	517418.Ctha_1419	Putative heavy-metal-binding	NA
UHGV-0023333_69	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0023333_69	COG	COG0393	NA	NA
UHGV-0023333_71	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0023333_71	UniRef90	UniRef90_A0A413UEK4	NA	NA
UHGV-0023333_71	eggNOG-mapper	936573.HMPREF1147_0268	NA	NA
UHGV-0023333_71	Pfam	PF10097	NA	DUF2335
UHGV-0023333_71	COG	COG5346	NA	NA
UHGV-0023333_71	Structural annotation	PF10097, COG5346	NA	NA