UHGV-0023687

Genome information

vOTU vOTU-072089

Genome length 13,693 bps

CDS count 19

Completeness 99.89% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0023687
vOTU ID	vOTU-072089
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_H_11_1999__NODE_3431_length_13693_cov_6.115977
BioSample	SAMEA4766139
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.06
Jumbo phage	No

Genome content
Genome length	13,693 bps
GC content	35.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	94.86%
Average CDS length	687.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0023687_1	PHROG	phrog_15455	tail fiber protein	tail
UHGV-0023687_1	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0023687_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0023687_3	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0023687_3	eggNOG-mapper	10747.Q37995_BPCP1	Phage Connector (GP10)	NA
UHGV-0023687_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0023687_3	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0023687_4	PHROG	phrog_11037	NA	unknown function
UHGV-0023687_4	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0023687_4	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0023687_4	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0023687_4	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0023687_4	Structural annotation	PF18013	NA	NA
UHGV-0023687_5	Structural annotation	PF20934	NA	NA
UHGV-0023687_6	UniRef90	UniRef90_A0A843GUF8	Ig-like domain repeat protein	NA
UHGV-0023687_6	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0023687_7	UniRef90	UniRef90_A0A2Z4GUU7	Ubinuclein-1-like protein	NA
UHGV-0023687_8	UniRef90	UniRef90_A0A2Z4GUK4	Cpl-7 lysozyme domain-containing protein	NA
UHGV-0023687_8	Structural annotation	PF08239, COG4991	NA	NA
UHGV-0023687_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0023687_10	UniRef90	UniRef90_A0A2Z4GUD4	DNA encapsidation protein	NA
UHGV-0023687_10	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0023687_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0023687_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0023687_11	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0023687_11	Structural annotation	PF17427	NA	NA
UHGV-0023687_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0023687_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0023687_13	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0023687_13	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0023687_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0023687_13	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA