UHGV-0023739

Genome information

vOTU vOTU-012074

Genome length 37,054 bps

CDS count 53

Completeness 91.40% (high-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0023739
vOTU ID	vOTU-012074
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_19_1739__NODE_2098_length_37054_cov_17.510290
BioSample	SAMEA4766019
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.83
Jumbo phage	No

Genome content
Genome length	37,054 bps
GC content	43.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.31%
Average CDS length	644.55 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0023739_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0023739_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0023739_1	UniRef90	UniRef90_A0A1C5VRZ8	Resolvase, N terminal domain	NA
UHGV-0023739_1	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0023739_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0023739_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0023739_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0023739_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0023739_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0023739_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0023739_2	UniRef90	UniRef90_UPI001C03809A	Abi family protein	NA
UHGV-0023739_2	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0023739_2	PADLOC	AbiD	AbiD	Abi
UHGV-0023739_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0023739_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0023739_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0023739_3	PHROG	phrog_87	metallo-protease	other
UHGV-0023739_3	UniRef90	UniRef90_UPI000E449709	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0023739_3	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0023739_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0023739_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0023739_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0023739_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0023739_4	UniRef90	UniRef90_A0A416N3H6	XRE family transcriptional regulator	NA
UHGV-0023739_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0023739_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0023739_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0023739_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0023739_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0023739_5	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0023739_5	UniRef90	UniRef90_A0A416N3I1	XRE family transcriptional regulator	NA
UHGV-0023739_5	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0023739_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0023739_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0023739_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0023739_6	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0023739_6	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-0023739_6	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0023739_6	Structural annotation	PF06573	NA	NA
UHGV-0023739_7	PHROG	phrog_28292	NA	unknown function
UHGV-0023739_7	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0023739_7	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0023739_11	Structural annotation	PF17950	NA	NA
UHGV-0023739_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0023739_16	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0023739_16	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0023739_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0023739_17	UniRef90	UniRef90_A0A1C5RDL1	Ribonuclease H	NA
UHGV-0023739_17	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0023739_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0023739_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0023739_19	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0023739_19	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0023739_19	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-0023739_19	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0023739_19	Pfam	PF13614	AAA domain	AAA_31
UHGV-0023739_19	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0023739_19	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0023739_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0023739_20	PHROG	phrog_15077	NA	unknown function
UHGV-0023739_20	UniRef90	UniRef90_A0A564VJH8	ParB-like nuclease domain protein	NA
UHGV-0023739_20	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0023739_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0023739_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0023739_21	PHROG	phrog_17690	NA	unknown function
UHGV-0023739_21	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0023739_21	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0023739_22	eggNOG-mapper	610130.Closa_0727	NA	NA
UHGV-0023739_25	UniRef90	UniRef90_UPI001E52B02C	helix-turn-helix transcriptional regulator	NA
UHGV-0023739_25	eggNOG-mapper	500632.CLONEX_03572	NA	NA
UHGV-0023739_25	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0023739_28	PHROG	phrog_26445	NA	unknown function
UHGV-0023739_28	UniRef90	UniRef90_UPI0018AC840B	helix-turn-helix domain containing protein	NA
UHGV-0023739_29	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0023739_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0023739_31	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-0023739_31	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0023739_31	Structural annotation	PF02996	NA	NA
UHGV-0023739_33	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0023739_33	UniRef90	UniRef90_A0A416N388	Terminase	NA
UHGV-0023739_33	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0023739_33	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0023739_33	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0023739_33	COG	COG5484	NA	NA
UHGV-0023739_33	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0023739_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0023739_34	PHROG	phrog_10250	NA	unknown function
UHGV-0023739_34	UniRef90	UniRef90_A0A173WM22	Phage terminase, large subunit, PBSX family	NA
UHGV-0023739_34	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0023739_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0023739_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0023739_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0023739_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0023739_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0023739_35	UniRef90	UniRef90_A0A416N3J2	Phage portal protein	NA
UHGV-0023739_35	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0023739_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0023739_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0023739_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0023739_36	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0023739_36	UniRef90	UniRef90_UPI001D0298CA	minor capsid protein	NA
UHGV-0023739_36	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0023739_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0023739_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0023739_36	COG	COG2369	NA	NA
UHGV-0023739_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0023739_37	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0023739_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0023739_39	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0023739_39	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0023739_39	Pfam	PF14265	NA	DUF4355
UHGV-0023739_39	Structural annotation	PF14265	NA	NA
UHGV-0023739_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0023739_40	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0023739_40	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0023739_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0023739_41	PHROG	phrog_2724	NA	unknown function
UHGV-0023739_41	UniRef90	UniRef90_A0A3D1FTV4	Transcription termination factor Rho	NA
UHGV-0023739_41	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0023739_41	Structural annotation	PF07498	NA	NA
UHGV-0023739_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0023739_42	UniRef90	UniRef90_UPI001593CDD6	phage head-tail connector protein	NA
UHGV-0023739_42	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0023739_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0023739_42	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0023739_43	PHROG	phrog_2168	NA	unknown function
UHGV-0023739_43	eggNOG-mapper	1235800.C819_00482	NA	NA
UHGV-0023739_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0023739_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0023739_44	UniRef90	UniRef90_A0A1C5S5J2	Phage protein, HK97 gp10 family	NA
UHGV-0023739_44	eggNOG-mapper	1211844.CBLM010000016_gene1487	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0023739_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0023739_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0023739_44	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0023739_45	PHROG	phrog_78	tail terminator	connector
UHGV-0023739_45	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0023739_45	Structural annotation	PF05657	NA	NA
UHGV-0023739_46	PHROG	phrog_158	major tail protein	tail
UHGV-0023739_46	UniRef90	UniRef90_UPI00189B22EE	phage tail protein	NA
UHGV-0023739_46	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0023739_46	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0023739_46	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0023739_47	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0023739_47	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-0023739_47	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0023739_47	Pfam	PF19591	NA	DUF6096
UHGV-0023739_47	Structural annotation	PF19591	NA	NA
UHGV-0023739_48	PHROG	phrog_2066	NA	unknown function
UHGV-0023739_48	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0023739_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0023739_49	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0023739_49	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0023739_49	COG	COG5283	Phage-related tail protein	NA
UHGV-0023739_50	PHROG	phrog_1194	NA	unknown function
UHGV-0023739_50	eggNOG-mapper	1000588.HMPREF9965_1690	NA	NA
UHGV-0023739_50	Pfam	PF20458	NA	DUF6711
UHGV-0023739_50	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0023739_51	PHROG	phrog_6616	tail protein	tail
UHGV-0023739_51	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0023739_51	eggNOG-mapper	1280.SAXN108_2275	Phage minor structural protein	NA
UHGV-0023739_51	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0023739_51	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0023739_51	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0023739_52	PHROG	phrog_11105	NA	unknown function
UHGV-0023739_53	PHROG	phrog_16164	NA	unknown function
UHGV-0023739_53	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA