UHGV-0023778

Genome information

Genome length 33,737 bps

CDS count 53

Completeness 93.38% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0023778
vOTU ID	vOTU-063175
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_24_1920__NODE_4133_length_33737_cov_24.963785
BioSample	SAMEA4766100
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.73
Jumbo phage	No

Genome content
Genome length	33,737 bps
GC content	34.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.69%
Average CDS length	605.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0023778_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0023778_1	PHROG	phrog_291	endolysin	lysis
UHGV-0023778_1	UniRef90	UniRef90_UPI001C395B9C	SH3 domain-containing protein	NA
UHGV-0023778_1	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-0023778_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0023778_1	COG	COG1388	LysM repeat	NA
UHGV-0023778_1	Structural annotation	PF01183, PF08460, PF00877, NF040675, COG3757	NA	NA
UHGV-0023778_2	PHROG	phrog_199	holin	lysis
UHGV-0023778_2	UniRef90	UniRef90_UPI001D132DB5	phage holin family protein	NA
UHGV-0023778_2	eggNOG-mapper	552396.HMPREF0863_00264	Bacteriophage holin family	NA
UHGV-0023778_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0023778_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0023778_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0023778_5	Structural annotation	PF10651	NA	NA
UHGV-0023778_6	PHROG	phrog_24267	NA	unknown function
UHGV-0023778_6	eggNOG-mapper	35344.A0A097PAT0_BPT12	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0023778_7	PHROG	phrog_8781	endolysin	lysis
UHGV-0023778_7	UniRef90	UniRef90_A0A3A6D9Z4	Peptidase C51 domain-containing protein	NA
UHGV-0023778_7	eggNOG-mapper	428127.EUBDOL_01204	hydrolase, family 25	NA
UHGV-0023778_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-0023778_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0023778_7	Structural annotation	PF05382, COG0791	NA	NA
UHGV-0023778_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0023778_8	UniRef90	UniRef90_UPI001D158A25	phage tail protein	NA
UHGV-0023778_8	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0023778_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0023778_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0023778_8	COG	COG4926	Phage-related protein	NA
UHGV-0023778_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0023778_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0023778_9	UniRef90	UniRef90_A0A3E3E586	Phage tail protein	NA
UHGV-0023778_9	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0023778_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0023778_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0023778_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0023778_10	PHROG	phrog_23464	NA	unknown function
UHGV-0023778_10	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0023778_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0023778_10	Structural annotation	COG5280	NA	NA
UHGV-0023778_12	eggNOG-mapper	33035.JPJF01000039_gene279	NA	NA
UHGV-0023778_13	PHROG	phrog_88	major tail protein	tail
UHGV-0023778_13	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-0023778_13	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0023778_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0023778_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0023778_14	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0023778_14	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0023778_14	Structural annotation	TIGR01725	NA	NA
UHGV-0023778_15	PHROG	phrog_78	tail terminator	connector
UHGV-0023778_15	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0023778_15	Structural annotation	PF05657	NA	NA
UHGV-0023778_16	PHROG	phrog_19734	NA	unknown function
UHGV-0023778_16	UniRef90	UniRef90_UPI001D15BD22	head-tail adaptor protein	NA
UHGV-0023778_16	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0023778_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0023778_17	PHROG	phrog_2550	NA	unknown function
UHGV-0023778_17	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0023778_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0023778_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0023778_18	UniRef90	UniRef90_UPI001D139C25	phage major capsid protein	NA
UHGV-0023778_18	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0023778_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0023778_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0023778_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0023778_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0023778_19	KOfam	K06904	NA	NA
UHGV-0023778_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0023778_19	UniRef90	UniRef90_UPI001D141099	HK97 family phage prohead protease	NA
UHGV-0023778_19	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0023778_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0023778_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0023778_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0023778_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0023778_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0023778_20	UniRef90	UniRef90_UPI001D13A36B	phage portal protein	NA
UHGV-0023778_20	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0023778_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0023778_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0023778_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0023778_20	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0023778_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0023778_21	UniRef90	UniRef90_UPI001D14D10A	terminase large subunit	NA
UHGV-0023778_21	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0023778_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0023778_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0023778_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0023778_21	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0023778_22	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0023778_22	UniRef90	UniRef90_UPI001D1546DE	P27 family phage terminase small subunit	NA
UHGV-0023778_22	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-0023778_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0023778_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0023778_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0023778_24	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0023778_24	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0023778_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0023778_26	PHROG	phrog_4525	NA	unknown function
UHGV-0023778_26	eggNOG-mapper	985762.SAGN_11402	NA	NA
UHGV-0023778_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0023778_27	Structural annotation	TIGR01637	NA	NA
UHGV-0023778_29	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0023778_29	UniRef90	UniRef90_UPI001D150D86	NA	NA
UHGV-0023778_29	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0023778_29	Pfam	PF11753	NA	DUF3310
UHGV-0023778_29	Structural annotation	PF11753	NA	NA
UHGV-0023778_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0023778_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0023778_30	UniRef90	UniRef90_UPI001D13B790	single-stranded DNA-binding protein	NA
UHGV-0023778_30	eggNOG-mapper	518637.EUBIFOR_00985	Single-stranded DNA-binding protein	NA
UHGV-0023778_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0023778_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0023778_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0023778_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0023778_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0023778_31	Structural annotation	PF11061	NA	NA
UHGV-0023778_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0023778_32	UniRef90	UniRef90_UPI000DA5F351	Lar family restriction alleviation protein	NA
UHGV-0023778_32	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0023778_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0023778_32	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0023778_32	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0023778_34	PHROG	phrog_4601	NA	unknown function
UHGV-0023778_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0023778_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0023778_36	UniRef90	UniRef90_UPI001D156F0D	tyrosine-type recombinase/integrase	NA
UHGV-0023778_36	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0023778_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0023778_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0023778_36	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0023778_38	PHROG	phrog_8470	NA	unknown function
UHGV-0023778_38	UniRef90	UniRef90_UPI001D1558B6	PcfJ domain-containing protein	NA
UHGV-0023778_38	eggNOG-mapper	1232449.BAHV02000018_gene1540	PcfJ-like protein	NA
UHGV-0023778_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0023778_38	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0023778_39	PHROG	phrog_7445	NA	unknown function
UHGV-0023778_39	UniRef90	UniRef90_UPI001D142670	PcfK-like family protein	NA
UHGV-0023778_39	eggNOG-mapper	484018.BACPLE_00685	PcfK-like protein	NA
UHGV-0023778_39	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0023778_39	Structural annotation	PF14058	NA	NA
UHGV-0023778_40	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0023778_40	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0023778_40	UniRef90	UniRef90_UPI001D13CF1D	DNA polymerase III subunit beta	NA
UHGV-0023778_40	eggNOG-mapper	658659.HMPREF0983_00467	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0023778_40	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0023778_40	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0023778_40	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0023778_40	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0023778_40	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0023778_40	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0023778_41	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0023778_41	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-0023778_43	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0023778_43	UniRef90	UniRef90_UPI001D14D4CB	conserved phage C-terminal domain-containing protein	NA
UHGV-0023778_43	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0023778_43	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0023778_43	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0023778_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0023778_43	Structural annotation	PF09524, PF07106, MF_01177, TIGR02220, TIGR01610, COG0640	NA	NA
UHGV-0023778_45	PHROG	phrog_6058	NA	unknown function
UHGV-0023778_45	eggNOG-mapper	658088.HMPREF0987_00666	NA	NA
UHGV-0023778_45	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0023778_47	PHROG	phrog_14657	NA	unknown function
UHGV-0023778_47	UniRef90	UniRef90_A0A0D3V9Q0	Cytoplasmic protein	NA
UHGV-0023778_47	eggNOG-mapper	428127.EUBDOL_01581	NA	NA
UHGV-0023778_47	Pfam	PF13780	NA	DUF4176
UHGV-0023778_47	COG	COG4495	NA	NA
UHGV-0023778_48	UniRef90	UniRef90_A0A3N0I2X1	XRE family transcriptional regulator	NA
UHGV-0023778_48	eggNOG-mapper	411465.PEPMIC_00039	Helix-turn-helix XRE-family like proteins	NA
UHGV-0023778_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0023778_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0023778_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0023778_49	UniRef90	UniRef90_D4JEI4	Predicted transcriptional regulator	NA
UHGV-0023778_49	eggNOG-mapper	428127.EUBDOL_01499	NA	NA
UHGV-0023778_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0023778_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0023778_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0023778_49	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0023778_50	UniRef90	UniRef90_A0A374RH46	bPH_3 domain-containing protein	NA
UHGV-0023778_50	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0023778_51	eggNOG-mapper	1177179.A11A3_12605	DNA-damage-inducible protein d	NA
UHGV-0023778_51	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0023778_52	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0023778_52	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0023778_52	UniRef90	UniRef90_A0A395W7P4	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0023778_52	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0023778_52	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0023778_52	Structural annotation	PF02452, NF007386, COG2337	NA	NA