UHGV-0023965

Genome information

vOTU vOTU-012075

Genome length 38,762 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0023965
vOTU ID	vOTU-012075
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_1_1731__NODE_1594_length_38762_cov_41.073930
BioSample	SAMEA4766011
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.51
Jumbo phage	No

Genome content
Genome length	38,762 bps
GC content	54.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.90%
Average CDS length	608.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0023965_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0023965_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0023965_1	UniRef90	UniRef90_A0A1C6FFC2	HNH domain-containing protein	NA
UHGV-0023965_1	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0023965_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0023965_2	PHROG	phrog_11237	NA	unknown function
UHGV-0023965_2	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0023965_2	Structural annotation	NF009167	NA	NA
UHGV-0023965_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0023965_5	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0023965_5	UniRef90	UniRef90_A0A6N8H6R0	ParB domain-containing protein	NA
UHGV-0023965_5	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0023965_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0023965_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0023965_5	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0023965_6	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0023965_6	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0023965_6	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0023965_6	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0023965_6	Pfam	PF13614	AAA domain	AAA_31
UHGV-0023965_6	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0023965_6	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0023965_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0023965_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0023965_7	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-0023965_7	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0023965_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0023965_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0023965_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0023965_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0023965_8	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0023965_8	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0023965_8	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0023965_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0023965_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0023965_8	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0023965_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0023965_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0023965_9	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-0023965_9	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0023965_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0023965_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0023965_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0023965_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0023965_9	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0023965_10	PHROG	phrog_1029	NA	unknown function
UHGV-0023965_10	UniRef90	UniRef90_T0TFF0	NA	NA
UHGV-0023965_10	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0023965_10	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0023965_11	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0023965_11	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0023965_11	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0023965_12	PHROG	phrog_7566	NA	unknown function
UHGV-0023965_12	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0023965_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0023965_13	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0023965_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0023965_14	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0023965_15	PHROG	phrog_10280	NA	unknown function
UHGV-0023965_15	eggNOG-mapper	1211640.K4JWC4_9CAUD	NA	NA
UHGV-0023965_17	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0023965_18	PHROG	phrog_750	NA	unknown function
UHGV-0023965_18	eggNOG-mapper	1158610.UC3_02381	NA	NA
UHGV-0023965_18	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0023965_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0023965_21	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0023965_21	UniRef90	UniRef90_UPI00195DE29C	helix-turn-helix domain-containing protein	NA
UHGV-0023965_21	eggNOG-mapper	397291.C804_03448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0023965_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0023965_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0023965_21	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0023965_23	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0023965_23	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0023965_23	UniRef90	UniRef90_A0A3D0EC75	Exonuclease	NA
UHGV-0023965_23	eggNOG-mapper	390874.Tpet_0342	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0023965_23	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0023965_23	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0023965_23	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0023965_23	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0023965_23	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0023965_24	KOfam	K14059	int; integrase	NA
UHGV-0023965_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0023965_24	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0023965_24	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0023965_24	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0023965_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0023965_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0023965_24	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0023965_25	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0023965_26	Structural annotation	PF12510	NA	NA
UHGV-0023965_27	PHROG	phrog_20016	NA	unknown function
UHGV-0023965_27	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0023965_27	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0023965_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0023965_29	PHROG	phrog_16490	NA	unknown function
UHGV-0023965_29	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0023965_30	PHROG	phrog_22984	NA	unknown function
UHGV-0023965_31	PHROG	phrog_21718	NA	unknown function
UHGV-0023965_31	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0023965_32	PHROG	phrog_3754	NA	unknown function
UHGV-0023965_32	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0023965_34	eggNOG-mapper	1235802.C823_04625	NA	NA
UHGV-0023965_34	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0023965_36	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0023965_36	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0023965_36	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0023965_37	PHROG	phrog_13256	NA	unknown function
UHGV-0023965_37	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0023965_38	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-0023965_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0023965_39	PHROG	phrog_291	endolysin	lysis
UHGV-0023965_39	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0023965_39	eggNOG-mapper	1408322.JHYK01000015_gene1912	Glycosyl hydrolase, family 25	NA
UHGV-0023965_39	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0023965_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0023965_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0023965_39	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0023965_40	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0023965_40	PHROG	phrog_7158	NA	unknown function
UHGV-0023965_40	eggNOG-mapper	862514.HMPREF0623_0302	Calcineurin-like phosphoesterase	NA
UHGV-0023965_40	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0023965_41	Structural annotation	PF10651	NA	NA
UHGV-0023965_42	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0023965_42	Structural annotation	NF040910	NA	NA
UHGV-0023965_44	PHROG	phrog_1220	head protein	head and packaging
UHGV-0023965_44	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0023965_44	eggNOG-mapper	936375.HMPREF1152_1087	NA	NA
UHGV-0023965_44	Structural annotation	PF20747	NA	NA
UHGV-0023965_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0023965_45	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0023965_45	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0023965_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0023965_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0023965_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0023965_46	UniRef90	UniRef90_A0A8J6IR89	Phage tail family protein	NA
UHGV-0023965_46	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0023965_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0023965_46	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0023965_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0023965_47	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-0023965_47	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0023965_47	COG	COG5412	Phage-related protein	NA
UHGV-0023965_48	eggNOG-mapper	33035.JPJF01000039_gene279	NA	NA
UHGV-0023965_49	PHROG	phrog_88	major tail protein	tail
UHGV-0023965_49	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0023965_49	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0023965_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0023965_49	COG	COG5492	NA	NA
UHGV-0023965_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0023965_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0023965_50	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0023965_50	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0023965_50	Structural annotation	TIGR01725	NA	NA
UHGV-0023965_51	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0023965_51	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0023965_52	PHROG	phrog_19734	NA	unknown function
UHGV-0023965_52	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0023965_52	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0023965_52	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0023965_52	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0023965_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0023965_53	PHROG	phrog_749	NA	unknown function
UHGV-0023965_53	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0023965_53	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0023965_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0023965_54	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0023965_54	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0023965_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0023965_54	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0023965_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0023965_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0023965_54	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0023965_55	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0023965_55	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0023965_55	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0023965_55	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0023965_55	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0023965_55	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0023965_55	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0023965_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0023965_56	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-0023965_56	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0023965_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0023965_56	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0023965_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0023965_56	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0023965_57	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0023965_57	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0023965_57	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0023965_57	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0023965_57	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0023965_57	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0023965_58	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0023965_58	UniRef90	UniRef90_A0A0G3WGQ0	Phage terminase, small subunit	NA
UHGV-0023965_58	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0023965_58	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA