UHGV-0024653

Genome information

Genome length 43,459 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0024653
vOTU ID	vOTU-012275
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_2_2343__NODE_971_length_43459_cov_6.291734
BioSample	SAMEA4766250
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.62
Jumbo phage	No

Genome content
Genome length	43,459 bps
GC content	47.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.22%
Average CDS length	600.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0024653_3	Structural annotation	PF10628	NA	NA
UHGV-0024653_6	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0024653_7	PHROG	phrog_824	NA	unknown function
UHGV-0024653_7	UniRef90	UniRef90_A0A414ZEU3	VRR-NUC domain-containing protein	NA
UHGV-0024653_7	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0024653_7	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0024653_7	Structural annotation	PF08774	NA	NA
UHGV-0024653_9	Pfam	PF21732	NA	DUF6864
UHGV-0024653_10	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0024653_10	PHROG	phrog_894	endolysin	lysis
UHGV-0024653_10	UniRef90	UniRef90_A0A255TPD5	Peptidase_M15_3 domain-containing protein	NA
UHGV-0024653_10	eggNOG-mapper	1088721.NSU_3108	Peptidase M15	NA
UHGV-0024653_10	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0024653_10	COG	COG3108	NA	NA
UHGV-0024653_10	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0024653_16	Structural annotation	PF09067	NA	NA
UHGV-0024653_23	UniRef90	UniRef90_A0A1V6HD22	Bacterial Ig-like domain (Group 2)	NA
UHGV-0024653_26	PHROG	phrog_23416	NA	unknown function
UHGV-0024653_26	eggNOG-mapper	585502.HMPREF0645_2512	NA	NA
UHGV-0024653_26	COG	COG2369	NA	NA
UHGV-0024653_27	PHROG	phrog_7376	portal protein	head and packaging
UHGV-0024653_27	eggNOG-mapper	1166018.FAES_1823	NA	NA
UHGV-0024653_29	PHROG	phrog_15220	virion structural protein	head and packaging
UHGV-0024653_29	eggNOG-mapper	1237149.C900_05356	NA	NA
UHGV-0024653_30	PHROG	phrog_18891	tail length tape measure protein	tail
UHGV-0024653_30	eggNOG-mapper	1347393.HG726021_gene383	Phage-related minor tail protein	NA
UHGV-0024653_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0024653_35	PHROG	phrog_4758	terminase large subunit	head and packaging
UHGV-0024653_35	UniRef90	UniRef90_A0A6J5LJ23	Terminase RNaseH-like domain containing protein	NA
UHGV-0024653_35	eggNOG-mapper	742767.HMPREF9456_03337	domain protein	NA
UHGV-0024653_35	COG	COG5410	NA	NA
UHGV-0024653_37	PHROG	phrog_13321	NA	unknown function
UHGV-0024653_37	UniRef90	UniRef90_A0A1H0N0K7	DNA repair photolyase	NA
UHGV-0024653_37	eggNOG-mapper	1122971.BAME01000006_gene910	DNA photolyase activity	NA
UHGV-0024653_37	COG	COG1533	DNA repair photolyase	NA
UHGV-0024653_37	Structural annotation	PF20903, MF_01865, NF033668, COG2100	NA	NA
UHGV-0024653_38	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0024653_38	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0024653_38	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-0024653_39	UniRef90	UniRef90_A0A3R6C0L8	ParB domain-containing protein	NA
UHGV-0024653_39	eggNOG-mapper	1122971.BAME01000006_gene912	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-0024653_39	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-0024653_40	eggNOG-mapper	1122971.BAME01000006_gene912	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-0024653_40	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-0024653_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0024653_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0024653_41	UniRef90	UniRef90_B0MZV1	Methyltransferase	NA
UHGV-0024653_41	eggNOG-mapper	445970.ALIPUT_02676	N-4 methylation of cytosine	NA
UHGV-0024653_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0024653_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0024653_41	COG	COG0863	DNA modification methylase	NA
UHGV-0024653_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0024653_42	UniRef90	UniRef90_F3QSQ3	Conserved domain protein	NA
UHGV-0024653_45	Structural annotation	PF10922	NA	NA
UHGV-0024653_46	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0024653_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0024653_46	UniRef90	UniRef90_A0A3N2NAZ8	PAPS_reduct domain-containing protein	NA
UHGV-0024653_46	eggNOG-mapper	357276.EL88_11445	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0024653_46	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0024653_46	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0024653_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0024653_46	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0024653_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0024653_47	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0024653_47	UniRef90	UniRef90_A0A3E4VX46	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0024653_47	eggNOG-mapper	411477.PARMER_02067	C-5 cytosine-specific DNA methylase	NA
UHGV-0024653_47	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0024653_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0024653_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0024653_47	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0024653_48	PHROG	phrog_874	NA	unknown function
UHGV-0024653_48	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0024653_48	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0024653_54	PHROG	phrog_16304	NA	unknown function
UHGV-0024653_54	eggNOG-mapper	521097.Coch_0881	NA	NA
UHGV-0024653_54	Pfam	PF19808	NA	DUF6291
UHGV-0024653_54	Structural annotation	PF07106, MF_01819, NF041413, COG5625	NA	NA
UHGV-0024653_55	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0024653_55	Pfam	PF11325	NA	DUF3127
UHGV-0024653_55	Structural annotation	PF11325, MF_00984, NF005579, COG2965	NA	NA
UHGV-0024653_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0024653_56	UniRef90	UniRef90_UPI0008D9D600	recombination protein NinB	NA
UHGV-0024653_56	Structural annotation	NF007281	NA	NA
UHGV-0024653_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0024653_57	UniRef90	UniRef90_A0A6J5MMW5	Essential recombination function protein	NA
UHGV-0024653_57	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-0024653_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0024653_58	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0024653_63	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0024653_66	Structural annotation	PF07022	NA	NA
UHGV-0024653_67	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0024653_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0024653_67	UniRef90	UniRef90_R6DY43	Site-specific recombinase phage integrase family	NA
UHGV-0024653_67	eggNOG-mapper	411479.BACUNI_00309	Belongs to the 'phage' integrase family	NA
UHGV-0024653_67	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0024653_67	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0024653_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0024653_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0024653_67	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA