UHGV-0025086

Genome information

Genome length 55,480 bps

CDS count 93

Completeness 100.00% (complete)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0025086
vOTU ID	vOTU-043602
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_1_1731__NODE_924_length_55557_cov_14.433147
BioSample	SAMEA4766011
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.89
Jumbo phage	No

Genome content
Genome length	55,480 bps
GC content	37.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	92.33%
Average CDS length	553.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0025086_1	PHROG	phrog_3136	NA	unknown function
UHGV-0025086_1	Structural annotation	PF12961, MF_00684, NF003443, COG4933	NA	NA
UHGV-0025086_2	PHROG	phrog_8684	NA	unknown function
UHGV-0025086_2	UniRef90	UniRef90_UPI00073F2D54	YopX family protein	NA
UHGV-0025086_2	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0025086_2	Pfam	PF09643	YopX protein	YopX
UHGV-0025086_5	PHROG	phrog_9662	NA	unknown function
UHGV-0025086_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0025086_7	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0025086_7	UniRef90	UniRef90_A0A2A5RI07	Methyltransferase	NA
UHGV-0025086_7	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0025086_7	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0025086_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0025086_7	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0025086_8	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0025086_8	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0025086_8	UniRef90	UniRef90_A0A7G5N2X4	Recombinase	NA
UHGV-0025086_8	eggNOG-mapper	1211844.CBLM010000016_gene1512	RecT family	NA
UHGV-0025086_8	Pfam	PF03837	RecT family	RecT
UHGV-0025086_8	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0025086_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0025086_8	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0025086_9	PHROG	phrog_674	NA	unknown function
UHGV-0025086_9	UniRef90	UniRef90_UPI001D08AD8A	NA	NA
UHGV-0025086_9	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0025086_9	Pfam	PF07083	NA	DUF1351
UHGV-0025086_9	Structural annotation	PF07083	NA	NA
UHGV-0025086_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0025086_11	UniRef90	UniRef90_A0A412YTC0	Recombinase	NA
UHGV-0025086_11	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0025086_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0025086_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0025086_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0025086_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0025086_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0025086_13	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0025086_13	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0025086_13	UniRef90	UniRef90_UPI00019AD162	AAA family ATPase	NA
UHGV-0025086_13	eggNOG-mapper	765123.HMPREF9621_00103	Ftsk_gamma	NA
UHGV-0025086_13	PADLOC	SspH_00002	SspH	SSP
UHGV-0025086_13	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0025086_13	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0025086_13	Structural annotation	PF01580, PF17854, MF_01076, NF041214, COG0433	NA	NA
UHGV-0025086_18	PHROG	phrog_4068	NA	unknown function
UHGV-0025086_18	Structural annotation	PF06657	NA	NA
UHGV-0025086_23	Structural annotation	PF13742, MF_01959, NF009635, COG3390	NA	NA
UHGV-0025086_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0025086_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0025086_27	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0025086_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0025086_27	COG	COG5410	NA	NA
UHGV-0025086_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0025086_30	UniRef90	UniRef90_A0A3S0MUV3	HNH endonuclease	NA
UHGV-0025086_30	eggNOG-mapper	1237149.C900_03881	HNH nucleases	NA
UHGV-0025086_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0025086_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0025086_31	UniRef90	UniRef90_UPI001BAB50B9	phage portal protein	NA
UHGV-0025086_31	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0025086_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0025086_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0025086_34	PHROG	phrog_29	major head protein	head and packaging
UHGV-0025086_34	UniRef90	UniRef90_A0A2K9P3U0	Phage major capsid protein E	NA
UHGV-0025086_34	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0025086_34	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0025086_34	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0025086_39	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0025086_45	eggNOG-mapper	1408415.JHXL01000001_gene403	deoxyhypusine monooxygenase activity	NA
UHGV-0025086_45	COG	COG1413	HEAT repeat	NA
UHGV-0025086_46	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0025086_48	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0025086_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0025086_56	Structural annotation	PF08281, NF001067, COG2739	NA	NA
UHGV-0025086_59	PHROG	phrog_16490	NA	unknown function
UHGV-0025086_59	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0025086_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0025086_61	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0025086_65	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0025086_65	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0025086_65	UniRef90	UniRef90_A0A2T0APF7	Endodeoxyribonuclease RusA	NA
UHGV-0025086_65	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0025086_65	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0025086_68	Structural annotation	PF18892	NA	NA
UHGV-0025086_71	UniRef90	UniRef90_UPI001C1FDD26	NA	NA
UHGV-0025086_71	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0025086_71	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0025086_74	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0025086_74	UniRef90	UniRef90_A0A1G9QFN7	Phg_2220_C domain-containing protein	NA
UHGV-0025086_74	eggNOG-mapper	358681.BBR47_29040	NA	NA
UHGV-0025086_74	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0025086_74	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0025086_74	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0025086_74	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0025086_74	Structural annotation	NF040939, COG3611	NA	NA
UHGV-0025086_75	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0025086_75	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0025086_75	UniRef90	UniRef90_A0A3N4VUU2	Methyltransferase	NA
UHGV-0025086_75	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0025086_75	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0025086_75	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0025086_75	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0025086_76	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0025086_76	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0025086_76	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0025086_76	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0025086_76	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0025086_76	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0025086_76	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0025086_81	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0025086_81	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0025086_81	UniRef90	UniRef90_R7FWV6	Single-stranded DNA-binding protein	NA
UHGV-0025086_81	eggNOG-mapper	1341151.ASZU01000008_gene1367	Single-strand binding protein family	NA
UHGV-0025086_81	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0025086_81	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0025086_81	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0025086_81	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0025086_83	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0025086_93	Structural annotation	PF02888, MF_01506, NF009256, COG3461	NA	NA