UHGV-0025506

Genome information

Genome length 42,716 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0025506
vOTU ID	vOTU-007273
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_9_2144__NODE_2033_length_42793_cov_15.280340
BioSample	SAMEA4766167
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.38
Jumbo phage	No

Genome content
Genome length	42,716 bps
GC content	59.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.72%
Average CDS length	772.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0025506_1	PHROG	phrog_22978	NA	unknown function
UHGV-0025506_1	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0025506_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0025506_2	eggNOG-mapper	411483.FAEPRAA2165_01035	NA	NA
UHGV-0025506_3	eggNOG-mapper	1305708.M9Q2I5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0025506_4	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0025506_4	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0025506_4	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0025506_5	PHROG	phrog_12105	NA	unknown function
UHGV-0025506_5	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0025506_6	PHROG	phrog_15239	NA	unknown function
UHGV-0025506_6	eggNOG-mapper	1507.HMPREF0262_03462	NA	NA
UHGV-0025506_7	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0025506_7	UniRef90	UniRef90_A0A316LK11	N4-gp56 family major capsid protein	NA
UHGV-0025506_7	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0025506_7	Pfam	PF13252	NA	DUF4043
UHGV-0025506_7	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0025506_7	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0025506_8	PHROG	phrog_13908	NA	unknown function
UHGV-0025506_8	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0025506_9	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0025506_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0025506_10	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0025506_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0025506_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0025506_11	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0025506_11	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0025506_11	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0025506_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0025506_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0025506_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0025506_14	Structural annotation	COG4451	NA	NA
UHGV-0025506_21	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0025506_21	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0025506_21	UniRef90	UniRef90_A0A1Y3WR29	Thymidylate synthase (FAD)	NA
UHGV-0025506_21	eggNOG-mapper	720554.Clocl_3035	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0025506_21	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0025506_21	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0025506_21	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0025506_21	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0025506_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0025506_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0025506_22	UniRef90	UniRef90_R5B767	Single-stranded DNA-binding protein	NA
UHGV-0025506_22	eggNOG-mapper	445971.ANASTE_01949	Single-stranded DNA-binding protein	NA
UHGV-0025506_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0025506_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0025506_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0025506_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0025506_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0025506_27	KOfam	K03700	recU; recombination protein U	NA
UHGV-0025506_27	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0025506_27	UniRef90	UniRef90_A0A2H4J2G2	Holliday junction resolvase RecU	NA
UHGV-0025506_27	eggNOG-mapper	1340434.AXVA01000013_gene296	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0025506_27	Pfam	PF03838	Recombination protein U	RecU
UHGV-0025506_27	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0025506_28	PHROG	phrog_15768	NA	unknown function
UHGV-0025506_28	Pfam	PF19808	NA	DUF6291
UHGV-0025506_28	Structural annotation	PF19808	NA	NA
UHGV-0025506_29	PHROG	phrog_23155	NA	unknown function
UHGV-0025506_29	eggNOG-mapper	350688.Clos_1293	NA	NA
UHGV-0025506_29	Structural annotation	PF18897	NA	NA
UHGV-0025506_30	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0025506_30	UniRef90	UniRef90_A0A354AUE1	YqaJ domain-containing protein	NA
UHGV-0025506_30	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0025506_30	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0025506_30	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0025506_30	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0025506_30	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0025506_32	PHROG	phrog_5781	NA	unknown function
UHGV-0025506_32	UniRef90	UniRef90_A0A263VK03	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0025506_32	eggNOG-mapper	1205683.CAKR01000002_gene2789	NA	NA
UHGV-0025506_32	Pfam	PF14359	NA	DUF4406
UHGV-0025506_32	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0025506_32	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0025506_37	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0025506_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0025506_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0025506_38	UniRef90	UniRef90_UPI00040C741F	phage antirepressor	NA
UHGV-0025506_38	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0025506_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0025506_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0025506_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0025506_38	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0025506_39	Structural annotation	PF07878, COG3609	NA	NA
UHGV-0025506_40	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0025506_42	UniRef90	UniRef90_A0A1Q6SAI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0025506_42	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0025506_42	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0025506_43	KOfam	K14059	int; integrase	NA
UHGV-0025506_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0025506_43	UniRef90	UniRef90_A0A416ZBA5	Site-specific integrase	NA
UHGV-0025506_43	eggNOG-mapper	643648.Slip_1975	Belongs to the 'phage' integrase family	NA
UHGV-0025506_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0025506_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0025506_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0025506_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0025506_47	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0025506_47	Pfam	PF09889	NA	DUF2116
UHGV-0025506_47	Pfam	PF04640	PLATZ transcription factor	PLATZ
UHGV-0025506_47	Pfam	PF12855	ECL1/2/3 zinc binding proteins	Ecl1
UHGV-0025506_49	PHROG	phrog_881	holin	lysis
UHGV-0025506_49	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0025506_49	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0025506_49	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0025506_49	Structural annotation	PF16938	NA	NA
UHGV-0025506_50	PHROG	phrog_1863	NA	unknown function
UHGV-0025506_50	UniRef90	UniRef90_A0A841PT51	Flp pilus assembly protein TadB	NA
UHGV-0025506_50	eggNOG-mapper	1121929.KB898684_gene1947	NA	NA
UHGV-0025506_51	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-0025506_51	PHROG	phrog_2649	endolysin	lysis
UHGV-0025506_51	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0025506_51	eggNOG-mapper	1246484.D479_19733	Ami_3	NA
UHGV-0025506_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0025506_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0025506_51	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0025506_52	PHROG	phrog_22978	NA	unknown function
UHGV-0025506_52	UniRef90	UniRef90_A0A396QCY9	MuF_C domain-containing protein	NA
UHGV-0025506_52	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA