UHGV-0025617

Genome information

Genome length 40,352 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9597

Prediction confidence Confident

Genome information
Genome ID	UHGV-0025617
vOTU ID	vOTU-012349
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_F_1_1963__NODE_1192_length_40352_cov_17.728020
BioSample	SAMEA4766131
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9597
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.27
Jumbo phage	No

Genome content
Genome length	40,352 bps
GC content	28.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.11%
Average CDS length	600.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0025617_1	KOfam	K14059	int; integrase	NA
UHGV-0025617_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0025617_1	UniRef90	UniRef90_R5A639	Tyr recombinase domain-containing protein	NA
UHGV-0025617_1	eggNOG-mapper	1203590.HMPREF1481_01156	Belongs to the 'phage' integrase family	NA
UHGV-0025617_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0025617_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0025617_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0025617_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0025617_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0025617_3	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-0025617_3	eggNOG-mapper	1304880.JAGB01000001_gene917	PFAM Helix-turn-helix	NA
UHGV-0025617_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0025617_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0025617_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0025617_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0025617_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0025617_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0025617_5	PHROG	phrog_989	NA	unknown function
UHGV-0025617_5	eggNOG-mapper	552396.HMPREF0863_00296	NA	NA
UHGV-0025617_7	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0025617_7	PHROG	phrog_16304	NA	unknown function
UHGV-0025617_7	eggNOG-mapper	1168289.AJKI01000067_gene1520	NA	NA
UHGV-0025617_7	Pfam	PF19808	NA	DUF6291
UHGV-0025617_7	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0025617_7	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0025617_7	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0025617_8	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0025617_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0025617_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0025617_9	UniRef90	UniRef90_A0A7X6XCF8	Single-stranded DNA-binding protein	NA
UHGV-0025617_9	eggNOG-mapper	1541959.KQ51_01279	Single-strand binding protein family	NA
UHGV-0025617_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0025617_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0025617_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0025617_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0025617_11	UniRef90	UniRef90_UPI000F63F93F	ERF family protein	NA
UHGV-0025617_11	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0025617_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0025617_11	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0025617_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0025617_12	UniRef90	UniRef90_A0A350H2L7	YqaJ domain-containing protein	NA
UHGV-0025617_12	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0025617_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0025617_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0025617_12	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0025617_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0025617_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0025617_14	UniRef90	UniRef90_A0A846ZU98	Single-stranded DNA-binding protein	NA
UHGV-0025617_14	eggNOG-mapper	720554.Clocl_4133	Single-stranded DNA-binding protein	NA
UHGV-0025617_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0025617_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0025617_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0025617_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0025617_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0025617_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0025617_15	eggNOG-mapper	1408437.JNJN01000039_gene370	NA	NA
UHGV-0025617_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0025617_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0025617_18	UniRef90	UniRef90_A0A376GT60	Prophage pi1 protein 29	NA
UHGV-0025617_18	eggNOG-mapper	1123302.KB904167_gene507	NA	NA
UHGV-0025617_20	Structural annotation	PF02559, MF_01194, TIGR02097	NA	NA
UHGV-0025617_21	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0025617_21	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0025617_21	UniRef90	UniRef90_A0A3E3DUV0	Adenine methyltransferase	NA
UHGV-0025617_21	eggNOG-mapper	411902.CLOBOL_04320	Belongs to the MT-A70-like family	NA
UHGV-0025617_21	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0025617_21	Pfam	PF05063	MT-A70	MT-A70
UHGV-0025617_21	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0025617_21	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0025617_22	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0025617_22	UniRef90	UniRef90_R7IG32	Orf31	NA
UHGV-0025617_34	PHROG	phrog_625	NA	unknown function
UHGV-0025617_34	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-0025617_34	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0025617_34	Structural annotation	PF12961	NA	NA
UHGV-0025617_40	PHROG	phrog_7839	NA	unknown function
UHGV-0025617_40	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-0025617_41	Structural annotation	PF15456	NA	NA
UHGV-0025617_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0025617_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0025617_42	UniRef90	UniRef90_UPI001A8E67D4	terminase	NA
UHGV-0025617_42	eggNOG-mapper	764299.STRIC_2523	DNA packaging	NA
UHGV-0025617_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0025617_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0025617_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0025617_43	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0025617_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0025617_43	UniRef90	UniRef90_UPI00189AAAC0	DNA packaging protein	NA
UHGV-0025617_43	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0025617_43	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0025617_43	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0025617_45	PHROG	phrog_156	portal protein	head and packaging
UHGV-0025617_45	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0025617_45	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0025617_45	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0025617_47	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0025617_47	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0025617_47	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0025617_47	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0025617_47	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0025617_49	PHROG	phrog_13046	NA	unknown function
UHGV-0025617_49	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0025617_49	Structural annotation	PF20387	NA	NA
UHGV-0025617_50	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0025617_50	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0025617_50	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0025617_52	eggNOG-mapper	1131462.DCF50_p1798	NA	NA
UHGV-0025617_53	eggNOG-mapper	1121100.JCM6294_1111	Phage minor structural protein	NA
UHGV-0025617_53	COG	COG4926	Phage-related protein	NA
UHGV-0025617_54	PHROG	phrog_372	tail protein	tail
UHGV-0025617_54	UniRef90	UniRef90_UPI0018E46574	NA	NA
UHGV-0025617_54	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG2967	NA	NA
UHGV-0025617_56	Structural annotation	PF18573, NF033147, COG4935	NA	NA
UHGV-0025617_58	Structural annotation	PF18573, NF033147, COG4935	NA	NA
UHGV-0025617_60	PHROG	phrog_443	holin	lysis
UHGV-0025617_60	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0025617_60	eggNOG-mapper	1211844.CBLM010000023_gene976	Putative lactococcus lactis phage r1t holin	NA
UHGV-0025617_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0025617_60	Structural annotation	PF16945	NA	NA
UHGV-0025617_61	PHROG	phrog_7698	endolysin	lysis
UHGV-0025617_61	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-0025617_61	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0025617_61	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0025617_61	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0025617_61	Structural annotation	PF08230	NA	NA
UHGV-0025617_62	UniRef90	UniRef90_A0A259SYS1	HNHc domain-containing protein	NA
UHGV-0025617_62	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0025617_63	PHROG	phrog_10822	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0025617_63	UniRef90	UniRef90_R7P5Q4	H-N-H endonuclease F-TflIV	NA
UHGV-0025617_63	eggNOG-mapper	500635.MITSMUL_03138	endonuclease activity	NA
UHGV-0025617_63	PADLOC	HEase_00002	homing endonuclease	RM
UHGV-0025617_63	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0025617_63	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA