UHGV-0026466

Genome information

vOTU vOTU-012093

Genome length 81,079 bps

CDS count 107

Completeness 99.90% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0026466
vOTU ID	vOTU-012093
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_M_13_1797__NODE_227_length_81079_cov_60.707266
BioSample	SAMEA4766043
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.15
Jumbo phage	No

Genome content
Genome length	81,079 bps
GC content	45.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	107
CDS density	86.68%
Average CDS length	659.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0026466_1	PHROG	phrog_872	NA	unknown function
UHGV-0026466_1	UniRef90	UniRef90_A0A3R6GAT0	NA	NA
UHGV-0026466_1	eggNOG-mapper	1122971.BAME01000039_gene3564	NA	NA
UHGV-0026466_1	Pfam	PF11195	NA	DUF2829
UHGV-0026466_1	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0026466_1	Structural annotation	PF11195	NA	NA
UHGV-0026466_15	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0026466_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0026466_15	UniRef90	UniRef90_A0A2L2WN54	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0026466_15	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0026466_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0026466_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0026466_15	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0026466_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0026466_17	UniRef90	UniRef90_UPI001C3862A3	NUMOD4 domain-containing protein	NA
UHGV-0026466_17	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-0026466_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0026466_17	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0026466_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0026466_17	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0026466_17	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0026466_18	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0026466_18	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0026466_18	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0026466_18	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0026466_20	Structural annotation	PF20338	NA	NA
UHGV-0026466_21	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0026466_21	eggNOG-mapper	720554.Clocl_0687	HNH endonuclease	NA
UHGV-0026466_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0026466_22	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0026466_23	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0026466_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0026466_23	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0026466_23	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-0026466_23	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0026466_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0026466_23	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0026466_24	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0026466_24	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0026466_24	UniRef90	UniRef90_UPI001F2ABE86	recombinase RecT	NA
UHGV-0026466_24	eggNOG-mapper	1122985.HMPREF1991_02240	Recombinase, phage RecT family	NA
UHGV-0026466_24	Pfam	PF03837	RecT family	RecT
UHGV-0026466_24	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0026466_24	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0026466_24	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0026466_25	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0026466_25	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0026466_25	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-0026466_25	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0026466_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-0026466_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0026466_25	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0026466_28	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0026466_28	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0026466_28	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-0026466_28	eggNOG-mapper	574376.BAMA_18225	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0026466_28	Pfam	PF00692	dUTPase	dUTPase
UHGV-0026466_28	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0026466_28	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0026466_29	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0026466_29	UniRef90	UniRef90_A0A8B2ATR0	Recombination protein NinG	NA
UHGV-0026466_29	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-0026466_29	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0026466_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0026466_29	Structural annotation	PF05766	NA	NA
UHGV-0026466_30	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-0026466_30	Structural annotation	PF08587	NA	NA
UHGV-0026466_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0026466_31	UniRef90	UniRef90_A0A646FWN7	Helix-turn-helix transcriptional regulator	NA
UHGV-0026466_31	eggNOG-mapper	421531.IX38_17280	Transcriptional regulator	NA
UHGV-0026466_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0026466_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0026466_32	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0026466_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0026466_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0026466_33	UniRef90	UniRef90_A0A3R6PLE7	Site-specific integrase	NA
UHGV-0026466_33	eggNOG-mapper	1235788.C802_04554	Arm DNA-binding domain	NA
UHGV-0026466_33	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0026466_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0026466_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0026466_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0026466_33	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0026466_34	Structural annotation	PF10623	NA	NA
UHGV-0026466_36	Structural annotation	PF19495	NA	NA
UHGV-0026466_37	PHROG	phrog_8470	NA	unknown function
UHGV-0026466_37	UniRef90	UniRef90_A0A2V1IJY8	PcfJ-like protein	NA
UHGV-0026466_37	eggNOG-mapper	679189.HMPREF9019_0934	NA	NA
UHGV-0026466_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0026466_37	Structural annotation	PF14284	NA	NA
UHGV-0026466_39	UniRef90	UniRef90_UPI00164C8BA9	PcfK-like family protein	NA
UHGV-0026466_39	eggNOG-mapper	1268240.ATFI01000007_gene436	PcfK-like protein	NA
UHGV-0026466_39	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0026466_39	Structural annotation	PF14058	NA	NA
UHGV-0026466_42	KOfam	K03555	mutS; DNA mismatch repair protein MutS	NA
UHGV-0026466_42	PHROG	phrog_8439	NA	unknown function
UHGV-0026466_42	UniRef90	UniRef90_A0A069CYI9	DNA mismatch repair protein MutS	NA
UHGV-0026466_42	eggNOG-mapper	1002367.HMPREF0673_00470	NA	NA
UHGV-0026466_42	Pfam	PF01624	MutS domain I	MutS_I
UHGV-0026466_42	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0026466_42	Structural annotation	PF01624	NA	NA
UHGV-0026466_47	UniRef90	UniRef90_A0A3R6LFQ0	XRE family transcriptional regulator	NA
UHGV-0026466_47	eggNOG-mapper	1122991.BAIZ01000025_gene1903	NA	NA
UHGV-0026466_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0026466_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0026466_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0026466_48	Structural annotation	PF02805	NA	NA
UHGV-0026466_49	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0026466_52	PHROG	phrog_10691	NA	unknown function
UHGV-0026466_52	UniRef90	UniRef90_A0A3L8AFK3	Helicase ATP-binding domain-containing protein	NA
UHGV-0026466_52	eggNOG-mapper	1121447.JONL01000012_gene3405	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	NA
UHGV-0026466_52	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0026466_52	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0026466_52	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0026466_52	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0026466_52	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0026466_53	PHROG	phrog_16490	NA	unknown function
UHGV-0026466_53	UniRef90	UniRef90_A0A8F1B6S5	Outer capsid protein/viral fiber	NA
UHGV-0026466_53	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-0026466_54	PHROG	phrog_28898	NA	unknown function
UHGV-0026466_54	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0026466_54	Structural annotation	PF21744	NA	NA
UHGV-0026466_58	PHROG	phrog_13892	minor tail protein	tail
UHGV-0026466_58	eggNOG-mapper	768710.DesyoDRAFT_1133	tail collar domain protein	NA
UHGV-0026466_58	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0026466_58	COG	COG4675	Phage tail collar domain	NA
UHGV-0026466_60	eggNOG-mapper	1217705.F900_01857	tail collar domain protein	NA
UHGV-0026466_60	COG	COG4675	Phage tail collar domain	NA
UHGV-0026466_61	eggNOG-mapper	1227276.HMPREF9148_00156	NA	NA
UHGV-0026466_63	Structural annotation	PF17994	NA	NA
UHGV-0026466_64	Structural annotation	PF17212	NA	NA
UHGV-0026466_66	PHROG	phrog_26635	NA	unknown function
UHGV-0026466_66	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0026466_67	PHROG	phrog_22323	NA	unknown function
UHGV-0026466_67	eggNOG-mapper	742817.HMPREF9449_01784	NA	NA
UHGV-0026466_68	PHROG	phrog_156	portal protein	head and packaging
UHGV-0026466_68	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-0026466_68	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0026466_70	Structural annotation	PF02368	NA	NA
UHGV-0026466_73	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0026466_73	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-0026466_73	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0026466_73	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0026466_73	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0026466_74	PHROG	phrog_32516	NA	unknown function
UHGV-0026466_74	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0026466_74	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0026466_76	PHROG	phrog_27246	NA	unknown function
UHGV-0026466_78	PHROG	phrog_20732	NA	unknown function
UHGV-0026466_78	UniRef90	UniRef90_A0A6G7X1I7	Phage holin family protein	NA
UHGV-0026466_78	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0026466_78	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0026466_79	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0026466_79	PHROG	phrog_822	amidase	lysis
UHGV-0026466_79	UniRef90	UniRef90_A0A646FVZ2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0026466_79	eggNOG-mapper	888832.HMPREF9420_0424	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0026466_79	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0026466_79	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0026466_79	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0026466_80	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0026466_81	UniRef90	UniRef90_A0A3R6M5X3	DNA-binding protein	NA
UHGV-0026466_81	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0026466_83	PHROG	phrog_8684	NA	unknown function
UHGV-0026466_83	UniRef90	UniRef90_A0A3R6AFS4	YopX domain-containing protein	NA
UHGV-0026466_83	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0026466_83	Pfam	PF09643	YopX protein	YopX
UHGV-0026466_83	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0026466_88	PHROG	phrog_872	NA	unknown function
UHGV-0026466_88	UniRef90	UniRef90_A0A3R6GAT0	NA	NA
UHGV-0026466_88	eggNOG-mapper	1122971.BAME01000039_gene3564	NA	NA
UHGV-0026466_88	Pfam	PF11195	NA	DUF2829
UHGV-0026466_88	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0026466_88	Structural annotation	PF11195	NA	NA
UHGV-0026466_102	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0026466_102	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0026466_102	UniRef90	UniRef90_A0A2L2WN54	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0026466_102	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0026466_102	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0026466_102	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0026466_102	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0026466_104	UniRef90	UniRef90_UPI001C2BD57F	phage holin family protein	NA
UHGV-0026466_104	eggNOG-mapper	457424.BFAG_02443	NA	NA
UHGV-0026466_104	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0026466_104	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0026466_105	Structural annotation	PF20765	NA	NA