UHGV-0027014

Genome information

Genome length 29,515 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9473

Prediction confidence Confident

Genome information
Genome ID	UHGV-0027014
vOTU ID	vOTU-068751
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_M_13_1797__NODE_1271_length_29515_cov_6.359162
BioSample	SAMEA4766043
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9473
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.76
Jumbo phage	No

Genome content
Genome length	29,515 bps
GC content	28.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.28%
Average CDS length	561.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0027014_1	PHROG	phrog_9589	endolysin	lysis
UHGV-0027014_1	UniRef90	UniRef90_UPI001A8D0C52	CHAP domain-containing protein	NA
UHGV-0027014_1	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0027014_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0027014_2	eggNOG-mapper	857293.CAAU_1000	NA	NA
UHGV-0027014_3	PHROG	phrog_918	NA	unknown function
UHGV-0027014_3	UniRef90	UniRef90_UPI001D020797	NA	NA
UHGV-0027014_3	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0027014_3	Pfam	PF19791	NA	DUF6275
UHGV-0027014_3	Structural annotation	PF19791	NA	NA
UHGV-0027014_4	PHROG	phrog_774	NA	unknown function
UHGV-0027014_4	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0027014_7	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0027014_8	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-0027014_9	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0027014_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0027014_10	UniRef90	UniRef90_UPI0006925FC0	phage tail protein	NA
UHGV-0027014_10	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0027014_10	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0027014_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0027014_10	COG	COG4926	Phage-related protein	NA
UHGV-0027014_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0027014_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0027014_11	UniRef90	UniRef90_T3DPJ8	Phage tail family protein	NA
UHGV-0027014_11	eggNOG-mapper	1151292.QEW_4524	tail component	NA
UHGV-0027014_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0027014_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0027014_12	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0027014_12	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-0027014_12	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0027014_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0027014_12	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0027014_13	PHROG	phrog_88	major tail protein	tail
UHGV-0027014_13	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-0027014_13	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0027014_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0027014_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0027014_14	PHROG	phrog_78	tail terminator	connector
UHGV-0027014_14	UniRef90	UniRef90_B7GIN5	Phage related protein	NA
UHGV-0027014_14	eggNOG-mapper	491915.Aflv_0670	NA	NA
UHGV-0027014_14	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0027014_15	UniRef90	UniRef90_A0A843HQ28	HK97 gp10 family phage protein	NA
UHGV-0027014_15	eggNOG-mapper	698758.AXY_02170	NA	NA
UHGV-0027014_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0027014_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0027014_16	UniRef90	UniRef90_UPI001C994240	phage head closure protein	NA
UHGV-0027014_16	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0027014_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0027014_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0027014_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0027014_17	PHROG	phrog_5223	neck protein	connector
UHGV-0027014_17	UniRef90	UniRef90_UPI00157A3953	head-tail connector protein	NA
UHGV-0027014_17	Structural annotation	TIGR01560	NA	NA
UHGV-0027014_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0027014_18	UniRef90	UniRef90_A0A3B8UB33	Phage major capsid protein	NA
UHGV-0027014_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0027014_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0027014_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0027014_19	KOfam	K06904	NA	NA
UHGV-0027014_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0027014_19	UniRef90	UniRef90_V9H369	HK97 family phage prohead protease	NA
UHGV-0027014_19	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-0027014_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0027014_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0027014_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0027014_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0027014_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0027014_20	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-0027014_20	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0027014_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0027014_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0027014_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0027014_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0027014_21	UniRef90	UniRef90_UPI001CFF08E1	terminase large subunit	NA
UHGV-0027014_21	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0027014_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0027014_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0027014_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0027014_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0027014_22	PHROG	phrog_1066	NA	unknown function
UHGV-0027014_22	eggNOG-mapper	1243664.CAVL020000054_gene3027	NA	NA
UHGV-0027014_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0027014_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0027014_23	UniRef90	UniRef90_UPI000686E4C9	HNH endonuclease	NA
UHGV-0027014_23	eggNOG-mapper	1167632.AJTR01000015_gene1284	HNH nucleases	NA
UHGV-0027014_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0027014_26	PHROG	phrog_709	NA	unknown function
UHGV-0027014_26	Structural annotation	PF11836	NA	NA
UHGV-0027014_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0027014_27	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0027014_27	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0027014_27	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0027014_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0027014_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0027014_28	UniRef90	UniRef90_A0A1M7NLW3	Site-specific recombinase XerD	NA
UHGV-0027014_28	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0027014_28	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0027014_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0027014_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0027014_28	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0027014_30	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0027014_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0027014_32	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0027014_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0027014_40	UniRef90	UniRef90_A0A0C2XY59	Phage replication initiation protein	NA
UHGV-0027014_40	eggNOG-mapper	319225.Plut_0817	NA	NA
UHGV-0027014_40	Structural annotation	PF10771, MF_01177, TIGR01714, COG3935	NA	NA
UHGV-0027014_43	PHROG	phrog_989	NA	unknown function
UHGV-0027014_43	eggNOG-mapper	469596.HMPREF9488_01471	NA	NA
UHGV-0027014_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0027014_46	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0027014_46	UniRef90	UniRef90_A0A417ZK36	XRE family transcriptional regulator	NA
UHGV-0027014_46	eggNOG-mapper	679201.HMPREF9334_00364	Transcriptional	NA
UHGV-0027014_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0027014_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027014_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0027014_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0027014_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0027014_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0027014_47	UniRef90	UniRef90_UPI000933B186	helix-turn-helix domain-containing protein	NA
UHGV-0027014_47	eggNOG-mapper	1487921.DP68_08670	Helix-turn-helix XRE-family like proteins	NA
UHGV-0027014_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027014_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0027014_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0027014_48	PHROG	phrog_2232	NA	unknown function
UHGV-0027014_48	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0027014_48	Structural annotation	PF14337, TIGR03899	NA	NA