UHGV-0027137

Genome information

Genome length 42,610 bps

CDS count 65

Completeness 98.69% (high-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0027137
vOTU ID	vOTU-065945
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_7_1734__NODE_1667_length_42610_cov_10.705029
BioSample	SAMEA4766014
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.39
Jumbo phage	No

Genome content
Genome length	42,610 bps
GC content	54.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	88.71%
Average CDS length	584.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0027137_1	PHROG	phrog_7964	NA	unknown function
UHGV-0027137_1	eggNOG-mapper	1280692.AUJL01000011_gene3221	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0027137_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0027137_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0027137_1	Structural annotation	MF_01691, NF040481, COG2171	NA	NA
UHGV-0027137_3	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0027137_3	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0027137_7	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0027137_7	UniRef90	UniRef90_UPI00189C01A2	GIY-YIG nuclease family protein	NA
UHGV-0027137_7	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0027137_7	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0027137_7	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0027137_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0027137_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0027137_8	UniRef90	UniRef90_G4KQB4	Putative Xre family DNA-binding protein	NA
UHGV-0027137_8	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0027137_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027137_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0027137_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0027137_10	PHROG	phrog_14556	NA	unknown function
UHGV-0027137_10	eggNOG-mapper	1120998.AUFC01000015_gene1569	competence protein COMEC	NA
UHGV-0027137_10	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0027137_12	KOfam	K14059	int; integrase	NA
UHGV-0027137_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0027137_12	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0027137_12	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0027137_12	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0027137_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0027137_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0027137_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0027137_15	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0027137_16	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0027137_16	UniRef90	UniRef90_UPI001D0722D8	Lar family restriction alleviation protein	NA
UHGV-0027137_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0027137_16	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0027137_16	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0027137_17	PHROG	phrog_15863	NA	unknown function
UHGV-0027137_17	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0027137_17	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0027137_17	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0027137_18	Pfam	PF08681	NA	DUF1778
UHGV-0027137_18	Structural annotation	PF03869, NF040976, COG4453	NA	NA
UHGV-0027137_21	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0027137_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0027137_21	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0027137_21	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0027137_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0027137_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0027137_21	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0027137_24	PHROG	phrog_35275	NA	unknown function
UHGV-0027137_24	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0027137_25	PHROG	phrog_371	major head protein	head and packaging
UHGV-0027137_25	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0027137_25	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0027137_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0027137_27	PHROG	phrog_156	portal protein	head and packaging
UHGV-0027137_27	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0027137_27	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0027137_28	PHROG	phrog_13046	NA	unknown function
UHGV-0027137_28	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0027137_28	Structural annotation	PF20387	NA	NA
UHGV-0027137_29	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0027137_29	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0027137_29	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0027137_30	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0027137_30	PHROG	phrog_819	tail protein	tail
UHGV-0027137_30	UniRef90	UniRef90_UPI00164C9345	collagen-like protein	NA
UHGV-0027137_30	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0027137_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0027137_31	PHROG	phrog_24267	NA	unknown function
UHGV-0027137_31	UniRef90	UniRef90_G0X4V0	Putative structural protein	NA
UHGV-0027137_31	eggNOG-mapper	1035184.HMPREF1042_1210	NA	NA
UHGV-0027137_31	COG	COG4675	Phage tail collar domain	NA
UHGV-0027137_31	Structural annotation	COG4675	NA	NA
UHGV-0027137_33	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0027137_33	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0027137_33	UniRef90	UniRef90_UPI001C02DE01	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0027137_33	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0027137_33	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0027137_33	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0027137_33	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0027137_34	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0027137_35	PHROG	phrog_13256	NA	unknown function
UHGV-0027137_35	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0027137_37	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0027137_37	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0027137_38	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0027137_38	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0027137_38	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0027137_38	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0027137_41	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0027137_42	Structural annotation	PF08281, MF_00674, TIGR01636	NA	NA
UHGV-0027137_44	Pfam	PF04448	NA	DUF551
UHGV-0027137_47	PHROG	phrog_9958	NA	unknown function
UHGV-0027137_47	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0027137_47	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0027137_47	Structural annotation	PF19789	NA	NA
UHGV-0027137_49	UniRef90	UniRef90_UPI00156FA052	NA	NA
UHGV-0027137_49	eggNOG-mapper	1395587.P364_0110505	NA	NA
UHGV-0027137_49	Structural annotation	PF16475	NA	NA
UHGV-0027137_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0027137_52	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0027137_52	UniRef90	UniRef90_UPI0011DD99A1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0027137_52	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0027137_52	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0027137_52	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0027137_53	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0027137_53	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0027137_53	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0027137_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0027137_53	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0027137_56	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0027137_56	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0027137_56	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0027137_56	eggNOG-mapper	1121013.P873_12640	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0027137_56	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0027137_56	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0027137_56	COG	COG0305	Replicative DNA helicase	NA
UHGV-0027137_56	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0027137_57	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0027137_57	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0027137_57	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0027137_58	PHROG	phrog_4973	NA	unknown function
UHGV-0027137_58	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0027137_58	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0027137_58	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0027137_58	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0027137_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0027137_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0027137_59	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0027137_59	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0027137_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0027137_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0027137_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0027137_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0027137_59	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0027137_60	PHROG	phrog_7566	NA	unknown function
UHGV-0027137_61	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0027137_61	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0027137_61	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0027137_61	Structural annotation	PF05772	NA	NA
UHGV-0027137_62	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0027137_62	UniRef90	UniRef90_UPI0009E55993	NA	NA
UHGV-0027137_62	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0027137_62	Pfam	PF06378	NA	DUF1071
UHGV-0027137_62	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0027137_65	PHROG	phrog_7964	NA	unknown function
UHGV-0027137_65	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0027137_65	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0027137_65	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0027137_65	Structural annotation	NF007499	NA	NA