UHGV-0027307

Genome information

Genome length 34,771 bps

CDS count 54

Completeness 97.90% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0027307
vOTU ID	vOTU-009077
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_N_19_2137__NODE_1541_length_34771_cov_8.148181
BioSample	SAMEA4766160
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.36
Jumbo phage	No

Genome content
Genome length	34,771 bps
GC content	45.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.80%
Average CDS length	587.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0027307_2	KOfam	K14059	int; integrase	NA
UHGV-0027307_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0027307_2	UniRef90	UniRef90_UPI001C0C539C	tyrosine-type recombinase/integrase	NA
UHGV-0027307_2	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0027307_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0027307_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0027307_2	Structural annotation	PF00589, MF_01808, NF002331, COG4973	NA	NA
UHGV-0027307_3	UniRef90	UniRef90_A0A6J7P3L5	Unannotated protein	NA
UHGV-0027307_3	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-0027307_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0027307_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0027307_4	UniRef90	UniRef90_A0A0M6WJ36	HTH cro/C1-type domain-containing protein	NA
UHGV-0027307_4	eggNOG-mapper	1507.HMPREF0262_03473	sequence-specific DNA binding	NA
UHGV-0027307_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027307_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0027307_4	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0027307_5	UniRef90	UniRef90_A0A3A9A5Y0	Helix-turn-helix domain-containing protein	NA
UHGV-0027307_5	eggNOG-mapper	1385512.N784_13400	NA	NA
UHGV-0027307_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027307_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0027307_10	PHROG	phrog_6058	NA	unknown function
UHGV-0027307_10	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0027307_10	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0027307_10	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0027307_12	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0027307_12	UniRef90	UniRef90_A0A0K2CZB3	Acetyltransferase	NA
UHGV-0027307_12	eggNOG-mapper	1121468.AUBR01000007_gene285	COG NOG12663 non supervised orthologous group	NA
UHGV-0027307_12	Structural annotation	PF11039, MF_02210, NF040503, COG1247	NA	NA
UHGV-0027307_13	PHROG	phrog_20014	NA	unknown function
UHGV-0027307_13	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0027307_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0027307_15	PHROG	phrog_26861	NA	unknown function
UHGV-0027307_15	UniRef90	UniRef90_A0A174WND2	Helix-destabilizing protein	NA
UHGV-0027307_15	eggNOG-mapper	1280698.AUJS01000006_gene2843	Single-strand binding protein family	NA
UHGV-0027307_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0027307_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0027307_15	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0027307_17	PHROG	phrog_24386	NA	unknown function
UHGV-0027307_17	eggNOG-mapper	622312.ROSEINA2194_03445	phosphatase activity	NA
UHGV-0027307_17	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0027307_18	PHROG	phrog_24368	NA	unknown function
UHGV-0027307_18	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0027307_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0027307_19	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0027307_19	UniRef90	UniRef90_A0A3A9F3H1	Methyltransferase	NA
UHGV-0027307_19	eggNOG-mapper	97139.C824_00741	DNA methylase	NA
UHGV-0027307_19	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0027307_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0027307_19	COG	COG0863	DNA modification methylase	NA
UHGV-0027307_19	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0027307_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0027307_21	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0027307_21	Structural annotation	PF21578	NA	NA
UHGV-0027307_22	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0027307_22	UniRef90	UniRef90_UPI0008488A8B	tRNA (adenine-N(6)-)-methyltransferase	NA
UHGV-0027307_22	eggNOG-mapper	641112.ACOK01000119_gene1514	NA	NA
UHGV-0027307_22	Structural annotation	PF13651, MF_02100, TIGR01712, COG0030	NA	NA
UHGV-0027307_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0027307_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0027307_26	UniRef90	UniRef90_UPI001C0C6936	ParA family protein	NA
UHGV-0027307_26	eggNOG-mapper	642492.Clole_0729	AAA domain	NA
UHGV-0027307_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-0027307_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0027307_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0027307_27	PHROG	phrog_15982	NA	unknown function
UHGV-0027307_27	UniRef90	UniRef90_UPI001D07CD5B	ParB N-terminal domain-containing protein	NA
UHGV-0027307_27	eggNOG-mapper	411902.CLOBOL_03889	ParB-like nuclease domain	NA
UHGV-0027307_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0027307_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0027307_27	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0027307_29	PHROG	phrog_25385	NA	unknown function
UHGV-0027307_29	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0027307_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0027307_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0027307_31	UniRef90	UniRef90_A0A3A9F3L6	Single-stranded DNA-binding protein	NA
UHGV-0027307_31	eggNOG-mapper	1280682.AUKA01000019_gene1126	Single-strand binding protein family	NA
UHGV-0027307_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0027307_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0027307_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0027307_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0027307_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0027307_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0027307_32	UniRef90	UniRef90_UPI001D06BD2A	P27 family phage terminase small subunit	NA
UHGV-0027307_32	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0027307_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0027307_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0027307_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0027307_33	UniRef90	UniRef90_UPI001D05EE8F	terminase large subunit	NA
UHGV-0027307_33	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0027307_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0027307_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0027307_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0027307_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0027307_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0027307_34	UniRef90	UniRef90_UPI001C0B5E3A	phage portal protein	NA
UHGV-0027307_34	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0027307_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0027307_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0027307_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0027307_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0027307_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0027307_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0027307_35	UniRef90	UniRef90_A0A3A9EY08	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0027307_35	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0027307_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0027307_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0027307_35	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0027307_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0027307_36	UniRef90	UniRef90_UPI001D075B31	phage major capsid protein	NA
UHGV-0027307_36	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0027307_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0027307_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0027307_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0027307_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0027307_37	PHROG	phrog_749	NA	unknown function
UHGV-0027307_37	UniRef90	UniRef90_UPI0007B3B3B7	phage head-tail connector protein	NA
UHGV-0027307_37	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0027307_38	PHROG	phrog_19734	NA	unknown function
UHGV-0027307_38	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0027307_38	eggNOG-mapper	610130.Closa_0746	NA	NA
UHGV-0027307_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0027307_39	eggNOG-mapper	1415774.U728_1249	NA	NA
UHGV-0027307_39	Structural annotation	TIGR01725	NA	NA
UHGV-0027307_41	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0027307_41	UniRef90	UniRef90_A0A401UUY1	S-l_SbsC_C domain-containing protein	NA
UHGV-0027307_41	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-0027307_42	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0027307_42	Structural annotation	PF06222	NA	NA
UHGV-0027307_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0027307_43	UniRef90	UniRef90_A0A174WW30	Phage-related protein	NA
UHGV-0027307_43	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0027307_43	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0027307_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0027307_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0027307_44	UniRef90	UniRef90_A0A174WNI0	Phage tail protein	NA
UHGV-0027307_44	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0027307_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0027307_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0027307_44	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0027307_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0027307_45	UniRef90	UniRef90_UPI001D05F61F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0027307_45	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0027307_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0027307_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0027307_46	PHROG	phrog_1220	head protein	head and packaging
UHGV-0027307_46	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0027307_46	eggNOG-mapper	411468.CLOSCI_00537	COG NOG18825 non supervised orthologous group	NA
UHGV-0027307_46	Structural annotation	PF13620, PF20747	NA	NA
UHGV-0027307_47	PHROG	phrog_5302	tail protein	tail
UHGV-0027307_47	eggNOG-mapper	742741.HMPREF9475_00438	NA	NA
UHGV-0027307_47	Structural annotation	PF16323, COG3979	NA	NA
UHGV-0027307_48	eggNOG-mapper	428125.CLOLEP_01428	NA	NA
UHGV-0027307_49	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0027307_50	PHROG	phrog_199	holin	lysis
UHGV-0027307_50	UniRef90	UniRef90_UPI001D08D7FC	phage holin family protein	NA
UHGV-0027307_50	eggNOG-mapper	1121333.JMLH01000047_gene1005	Bacteriophage holin family	NA
UHGV-0027307_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0027307_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0027307_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0027307_51	eggNOG-mapper	397290.C810_00439	NA	NA
UHGV-0027307_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0027307_52	PHROG	phrog_1794	amidase	lysis
UHGV-0027307_52	UniRef90	UniRef90_UPI001C0DDDE3	peptidoglycan recognition protein family protein	NA
UHGV-0027307_52	eggNOG-mapper	665950.HMPREF1025_01587	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0027307_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0027307_52	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0027307_52	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0027307_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0027307_52	Structural annotation	PF01510, PF18013, MF_04111, NF008758, COG5632, COG4991	NA	NA
UHGV-0027307_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0027307_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0027307_54	UniRef90	UniRef90_D4MZ82	Predicted transcriptional regulators	NA
UHGV-0027307_54	eggNOG-mapper	1280698.AUJS01000036_gene57	NA	NA
UHGV-0027307_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0027307_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027307_54	Pfam	PF12674	Putative zinc ribbon domain	Zn_ribbon_2
UHGV-0027307_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA