UHGV-0027357

Genome information

Genome length 38,485 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0027357
vOTU ID	vOTU-043806
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_7_1773__NODE_1958_length_38485_cov_128.646870
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.01
Jumbo phage	No

Genome content
Genome length	38,485 bps
GC content	33.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.48%
Average CDS length	494.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0027357_2	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-0027357_3	UniRef90	UniRef90_A0A1I0GDZ0	Peptidase_M78 domain-containing protein	NA
UHGV-0027357_3	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0027357_3	Structural annotation	PF13058, MF_00745	NA	NA
UHGV-0027357_4	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0027357_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0027357_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0027357_5	UniRef90	UniRef90_UPI001431667E	single-stranded DNA-binding protein	NA
UHGV-0027357_5	eggNOG-mapper	1295642.H839_08184	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0027357_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0027357_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0027357_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0027357_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0027357_5	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0027357_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-0027357_6	UniRef90	UniRef90_UPI000AC4FB2A	NA	NA
UHGV-0027357_6	eggNOG-mapper	673376.F2VHW0_9CAUD	NA	NA
UHGV-0027357_6	Pfam	PF11753	NA	DUF3310
UHGV-0027357_13	PHROG	phrog_2715	NA	unknown function
UHGV-0027357_13	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0027357_13	Structural annotation	PF18406	NA	NA
UHGV-0027357_15	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0027357_15	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0027357_16	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0027357_19	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0027357_19	UniRef90	UniRef90_UPI001F053D78	HNH endonuclease	NA
UHGV-0027357_19	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0027357_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0027357_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0027357_19	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0027357_20	PHROG	phrog_22292	NA	unknown function
UHGV-0027357_21	PHROG	phrog_22292	NA	unknown function
UHGV-0027357_23	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0027357_23	UniRef90	UniRef90_UPI00164E7D72	sugar-phospahte nucleotidyltransferase	NA
UHGV-0027357_23	eggNOG-mapper	1235797.C816_04032	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0027357_23	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0027357_23	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0027357_25	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0027357_25	UniRef90	UniRef90_UPI00156E6FB9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0027357_25	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0027357_25	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0027357_25	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0027357_25	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0027357_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0027357_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0027357_28	UniRef90	UniRef90_A0A6B9SRH5	DNA replication protein	NA
UHGV-0027357_28	eggNOG-mapper	1235799.C818_03430	IstB-like ATP binding protein	NA
UHGV-0027357_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0027357_28	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0027357_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0027357_28	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0027357_29	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0027357_29	UniRef90	UniRef90_UPI001D07DF54	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0027357_29	eggNOG-mapper	1244083.CSUNSWCD_1478	NA	NA
UHGV-0027357_29	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0027357_29	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0027357_29	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0027357_30	PHROG	phrog_4973	NA	unknown function
UHGV-0027357_30	UniRef90	UniRef90_A0A3R6RL03	DNA-binding protein	NA
UHGV-0027357_30	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0027357_30	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0027357_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0027357_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0027357_31	UniRef90	UniRef90_A0A3E3E0Z5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0027357_31	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0027357_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0027357_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0027357_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0027357_32	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0027357_32	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0027357_32	Structural annotation	PF05772	NA	NA
UHGV-0027357_33	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0027357_33	UniRef90	UniRef90_A0A7C6TWW8	Siphovirus Gp157 family protein	NA
UHGV-0027357_33	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0027357_33	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0027357_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0027357_35	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0027357_35	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0027357_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0027357_35	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0027357_38	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0027357_38	Structural annotation	PF18789	NA	NA
UHGV-0027357_42	UniRef90	UniRef90_UPI00096A7D52	helix-turn-helix domain-containing protein	NA
UHGV-0027357_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0027357_42	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0027357_43	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0027357_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0027357_43	UniRef90	UniRef90_A0A3D3W9W9	HTH cro/C1-type domain-containing protein	NA
UHGV-0027357_43	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-0027357_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0027357_43	COG	COG1426	NA	NA
UHGV-0027357_44	KOfam	K14059	int; integrase	NA
UHGV-0027357_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0027357_44	UniRef90	UniRef90_UPI001436B14E	site-specific integrase	NA
UHGV-0027357_44	eggNOG-mapper	1158606.I579_02177	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0027357_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0027357_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0027357_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0027357_46	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0027357_47	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0027357_48	PHROG	phrog_21718	NA	unknown function
UHGV-0027357_48	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0027357_49	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0027357_50	PHROG	phrog_37604	NA	unknown function
UHGV-0027357_50	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0027357_51	PHROG	phrog_1129	holin	lysis
UHGV-0027357_51	UniRef90	UniRef90_A0A3D5L0S0	Enolase	NA
UHGV-0027357_51	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-0027357_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0027357_51	Structural annotation	PF06946	NA	NA
UHGV-0027357_52	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0027357_52	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0027357_57	PHROG	phrog_6779	tail protein	tail
UHGV-0027357_57	eggNOG-mapper	1158601.I585_04168	NA	NA
UHGV-0027357_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0027357_58	PHROG	phrog_3088	amidase	lysis
UHGV-0027357_58	UniRef90	UniRef90_A0A7U9GPE9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0027357_58	eggNOG-mapper	552525.B5LPS9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0027357_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0027357_59	PHROG	phrog_7064	tail protein	tail
UHGV-0027357_59	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0027357_60	PHROG	phrog_13564	minor tail protein	tail
UHGV-0027357_60	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0027357_60	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0027357_61	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0027357_61	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0027357_61	UniRef90	UniRef90_UPI0008A51EA0	phage tail tape measure protein	NA
UHGV-0027357_61	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0027357_61	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0027357_61	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0027357_61	COG	COG1340	NA	NA
UHGV-0027357_61	Structural annotation	PF10145, PF16746, TIGR01760	NA	NA
UHGV-0027357_63	PHROG	phrog_88	major tail protein	tail
UHGV-0027357_63	UniRef90	UniRef90_U2KWM8	Phage major tail protein, phi13 family	NA
UHGV-0027357_63	eggNOG-mapper	411473.RUMCAL_01152	phage major tail protein, phi13 family	NA
UHGV-0027357_63	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0027357_63	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0027357_63	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0027357_64	UniRef90	UniRef90_R6TDA5	Prophage pi2 protein 37	NA
UHGV-0027357_64	eggNOG-mapper	1415774.U728_1249	NA	NA
UHGV-0027357_65	eggNOG-mapper	1035184.HMPREF1042_1218	NA	NA
UHGV-0027357_65	Structural annotation	PF05657	NA	NA
UHGV-0027357_66	PHROG	phrog_19734	NA	unknown function
UHGV-0027357_66	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0027357_67	PHROG	phrog_749	NA	unknown function
UHGV-0027357_67	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0027357_68	PHROG	phrog_10	major head protein	head and packaging
UHGV-0027357_68	UniRef90	UniRef90_R9K3K4	HK97 family phage major capsid protein	NA
UHGV-0027357_68	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0027357_68	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0027357_68	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0027357_68	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0027357_68	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0027357_69	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0027357_69	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0027357_69	UniRef90	UniRef90_UPI000465AB2C	Clp protease ClpP	NA
UHGV-0027357_69	eggNOG-mapper	1291050.JAGE01000001_gene2921	Belongs to the peptidase S14 family	NA
UHGV-0027357_69	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0027357_69	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0027357_69	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0027357_70	PHROG	phrog_12	portal protein	head and packaging
UHGV-0027357_70	UniRef90	UniRef90_A0A252F2R2	Phage portal protein	NA
UHGV-0027357_70	eggNOG-mapper	1220589.CD32_00790	portal protein	NA
UHGV-0027357_70	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0027357_70	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0027357_70	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0027357_71	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0027357_71	UniRef90	UniRef90_A0A6L5X777	Terminase large subunit	NA
UHGV-0027357_71	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0027357_71	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0027357_71	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA