UHGV-0027715

Genome information

vOTU vOTU-032037

Genome length 22,038 bps

CDS count 30

Completeness 62.81% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0027715
vOTU ID	vOTU-032037
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_D_1_2641__NODE_2361_length_22038_cov_5.301307
BioSample	SAMEA4766382
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.38
Jumbo phage	No

Genome content
Genome length	22,038 bps
GC content	59.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	93.85%
Average CDS length	693.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0027715_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0027715_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0027715_1	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0027715_1	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0027715_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0027715_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0027715_2	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0027715_2	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0027715_2	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0027715_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0027715_2	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0027715_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0027715_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0027715_3	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0027715_3	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0027715_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0027715_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0027715_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0027715_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0027715_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0027715_6	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0027715_6	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0027715_6	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0027715_7	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0027715_7	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0027715_7	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0027715_7	Structural annotation	PF01844	NA	NA
UHGV-0027715_8	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0027715_8	Structural annotation	PF19962	NA	NA
UHGV-0027715_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0027715_9	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0027715_9	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0027715_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0027715_9	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0027715_10	PHROG	phrog_104	portal protein	head and packaging
UHGV-0027715_10	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0027715_10	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0027715_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0027715_11	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0027715_11	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0027715_11	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0027715_11	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0027715_11	Structural annotation	PF20344	NA	NA
UHGV-0027715_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0027715_14	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0027715_14	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0027715_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0027715_14	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0027715_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0027715_15	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0027715_15	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0027715_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0027715_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0027715_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0027715_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0027715_17	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0027715_17	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0027715_17	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0027715_17	Structural annotation	PF09355	NA	NA
UHGV-0027715_18	PHROG	phrog_501	head closure Hc1	connector
UHGV-0027715_18	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0027715_18	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0027715_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0027715_19	PHROG	phrog_387	neck protein	connector
UHGV-0027715_19	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0027715_19	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0027715_20	PHROG	phrog_123	tail terminator	connector
UHGV-0027715_20	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0027715_20	Structural annotation	PF06141	NA	NA
UHGV-0027715_21	PHROG	phrog_117	major tail protein	tail
UHGV-0027715_21	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0027715_21	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0027715_21	COG	COG5492	NA	NA
UHGV-0027715_21	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0027715_22	PHROG	phrog_1526	NA	unknown function
UHGV-0027715_22	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0027715_23	Structural annotation	PF17318	NA	NA
UHGV-0027715_24	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0027715_24	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0027715_24	COG	COG1511	NA	NA
UHGV-0027715_25	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0027715_25	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0027715_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0027715_25	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0027715_26	PHROG	phrog_3558	tail protein	tail
UHGV-0027715_26	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0027715_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0027715_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0027715_26	COG	COG4926	Phage-related protein	NA
UHGV-0027715_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0027715_27	PHROG	phrog_9534	head protein	head and packaging
UHGV-0027715_27	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0027715_27	COG	COG5492	NA	NA
UHGV-0027715_28	PHROG	phrog_29248	NA	unknown function
UHGV-0027715_29	PHROG	phrog_2310	NA	unknown function
UHGV-0027715_30	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0027715_30	PHROG	phrog_366	tail fiber protein	tail
UHGV-0027715_30	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0027715_30	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0027715_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen