UHGV-0027911

Genome information

vOTU vOTU-012068

Genome length 41,561 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0027911
vOTU ID	vOTU-012068
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_24_1866__NODE_1429_length_41561_cov_7.345217
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.84
Jumbo phage	No

Genome content
Genome length	41,561 bps
GC content	47.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.48%
Average CDS length	788.14 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0027911_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0027911_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0027911_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0027911_8	PHROG	phrog_9467	NA	unknown function
UHGV-0027911_8	UniRef90	UniRef90_UPI0018C8333C	Gp49 family protein	NA
UHGV-0027911_8	eggNOG-mapper	573061.Clocel_3545	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0027911_8	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0027911_8	dbAPIS	APIS043	NA	NA
UHGV-0027911_8	Structural annotation	PF13876	NA	NA
UHGV-0027911_9	PHROG	phrog_26249	NA	unknown function
UHGV-0027911_9	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0027911_9	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0027911_9	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0027911_9	COG	COG1388	LysM repeat	NA
UHGV-0027911_9	Structural annotation	PF21277	NA	NA
UHGV-0027911_11	PHROG	phrog_4105	NA	unknown function
UHGV-0027911_11	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0027911_12	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0027911_12	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0027911_14	PHROG	phrog_1640	tail protein	tail
UHGV-0027911_14	UniRef90	UniRef90_A0A4P0Z7S7	Phage tail-fiber protein	NA
UHGV-0027911_14	eggNOG-mapper	215158.FIBER_BPE15	outer membrane	NA
UHGV-0027911_15	PHROG	phrog_9880	NA	unknown function
UHGV-0027911_15	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0027911_15	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0027911_16	UniRef90	UniRef90_A0A1B3X2T2	NlpC/P60 domain-containing protein	NA
UHGV-0027911_16	Structural annotation	NF008096	NA	NA
UHGV-0027911_17	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0027911_17	Structural annotation	TIGR02971	NA	NA
UHGV-0027911_18	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0027911_18	eggNOG-mapper	492774.JQMB01000013_gene3025	NA	NA
UHGV-0027911_18	Structural annotation	PF11039, MF_02210, NF011709, COG1247	NA	NA
UHGV-0027911_19	PHROG	phrog_376	tail protein	tail
UHGV-0027911_19	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0027911_19	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-0027911_19	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0027911_20	PHROG	phrog_394	tail protein	tail
UHGV-0027911_20	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-0027911_20	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-0027911_20	Structural annotation	PF17212	NA	NA
UHGV-0027911_21	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0027911_22	PHROG	phrog_427	NA	unknown function
UHGV-0027911_22	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-0027911_22	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0027911_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0027911_23	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-0027911_23	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-0027911_23	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0027911_23	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0027911_24	PHROG	phrog_458	protease	other
UHGV-0027911_24	UniRef90	UniRef90_A0A6N6L8Z8	Protease	NA
UHGV-0027911_24	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-0027911_26	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0027911_26	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-0027911_26	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-0027911_26	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0027911_26	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0027911_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0027911_28	PHROG	phrog_5902	NA	unknown function
UHGV-0027911_28	UniRef90	UniRef90_A0A1B1I1J7	Terminase	NA
UHGV-0027911_28	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0027911_28	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0027911_28	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0027911_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0027911_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0027911_29	UniRef90	UniRef90_A0A8B2QP55	Phage terminase small subunit	NA
UHGV-0027911_29	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0027911_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0027911_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0027911_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0027911_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0027911_31	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0027911_31	Structural annotation	PF21578	NA	NA
UHGV-0027911_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0027911_35	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0027911_35	UniRef90	UniRef90_UPI0014131155	ParB/RepB/Spo0J family partition protein	NA
UHGV-0027911_35	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0027911_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0027911_35	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0027911_35	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0027911_35	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0027911_36	Pfam	PF01476	LysM domain	LysM
UHGV-0027911_36	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0027911_37	UniRef90	UniRef90_UPI001959B0CA	NA	NA
UHGV-0027911_37	eggNOG-mapper	1504823.CCMM01000006_gene385	Antirestriction protein (ArdA)	NA
UHGV-0027911_37	Pfam	PF12957	NA	DUF3846
UHGV-0027911_37	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0027911_37	Structural annotation	PF12957	NA	NA
UHGV-0027911_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0027911_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0027911_44	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0027911_44	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0027911_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0027911_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0027911_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0027911_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0027911_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0027911_45	UniRef90	UniRef90_UPI0015701830	helix-turn-helix domain-containing protein	NA
UHGV-0027911_45	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0027911_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0027911_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0027911_45	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0027911_46	UniRef90	UniRef90_A0A2E7HJJ8	NA	NA
UHGV-0027911_46	Pfam	PF05656	NA	DUF805
UHGV-0027911_46	COG	COG3152	NA	NA
UHGV-0027911_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0027911_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0027911_48	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0027911_48	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0027911_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0027911_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0027911_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0027911_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0027911_48	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0027911_49	eggNOG-mapper	626939.HMPREF9443_00818	NA	NA