UHGV-0028624

Genome information

Genome length 13,807 bps

CDS count 19

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0028624
vOTU ID	vOTU-009732
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_7_2399__NODE_6541_length_13807_cov_9.250473
BioSample	SAMEA4766273
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.79
Jumbo phage	No

Genome content
Genome length	13,807 bps
GC content	33.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	92.78%
Average CDS length	678.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0028624_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0028624_5	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0028624_5	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0028624_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0028624_5	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0028624_6	UniRef90	UniRef90_A0A3D2W7M3	Peptidase C51 domain-containing protein	NA
UHGV-0028624_6	eggNOG-mapper	931626.Awo_c16100	CHAP domain	NA
UHGV-0028624_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0028624_6	COG	COG3942	Surface antigen	NA
UHGV-0028624_6	Structural annotation	COG3942	NA	NA
UHGV-0028624_7	Structural annotation	PF20934	NA	NA
UHGV-0028624_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0028624_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0028624_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0028624_12	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0028624_12	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0028624_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0028624_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0028624_13	Structural annotation	PF17427	NA	NA
UHGV-0028624_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0028624_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0028624_14	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0028624_14	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0028624_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0028624_14	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA