UHGV-0028960

Genome information

Genome length 33,256 bps

CDS count 48

Completeness 73.45% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0028960
vOTU ID	vOTU-032435
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_14_2320__NODE_2776_length_33256_cov_32.342054
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.13
Jumbo phage	No

Genome content
Genome length	33,256 bps
GC content	44.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.27%
Average CDS length	620.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0028960_1	UniRef90	UniRef90_A0A496TDK5	Ribonucleotide-diphosphate reductase subunit alpha (Fragment)	NA
UHGV-0028960_1	eggNOG-mapper	857293.CAAU_0739	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	NA
UHGV-0028960_1	Pfam	PF00317	Ribonucleotide reductase, all-alpha domain	Ribonuc_red_lgN
UHGV-0028960_1	COG	COG0209	Ribonucleotide reductase alpha subunit	NA
UHGV-0028960_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0028960_3	eggNOG-mapper	1121334.KB911068_gene2276	NA	NA
UHGV-0028960_3	Pfam	PF07374	NA	DUF1492
UHGV-0028960_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0028960_4	PHROG	phrog_3253	NA	unknown function
UHGV-0028960_4	Structural annotation	PF18618	NA	NA
UHGV-0028960_6	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0028960_6	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0028960_6	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0028960_6	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0028960_6	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0028960_7	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0028960_7	UniRef90	UniRef90_A0A173Y540	Superfamily II helicase and inactivated derivatives	NA
UHGV-0028960_7	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0028960_7	Pfam	PF06048	NA	DUF927
UHGV-0028960_7	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0028960_7	COG	COG5519	NA	NA
UHGV-0028960_7	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0028960_8	PHROG	phrog_11992	NA	unknown function
UHGV-0028960_8	UniRef90	UniRef90_A0A316RX24	ZnF_CHCC domain-containing protein	NA
UHGV-0028960_8	eggNOG-mapper	1203606.HMPREF1526_00947	CHC2 zinc finger	NA
UHGV-0028960_8	PADLOC	drt-UG29	DRT	DRT
UHGV-0028960_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0028960_8	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0028960_8	Structural annotation	PF01807	NA	NA
UHGV-0028960_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0028960_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0028960_9	UniRef90	UniRef90_A0A2V2FX13	Single-stranded DNA-binding protein	NA
UHGV-0028960_9	eggNOG-mapper	1304880.JAGB01000003_gene1326	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0028960_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0028960_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0028960_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0028960_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0028960_9	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0028960_13	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0028960_13	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0028960_15	PHROG	phrog_9958	NA	unknown function
UHGV-0028960_15	UniRef90	UniRef90_A0A6N8GXR0	NA	NA
UHGV-0028960_15	eggNOG-mapper	1519439.JPJG01000037_gene956	NA	NA
UHGV-0028960_15	Pfam	PF19789	NA	DUF6273
UHGV-0028960_15	Structural annotation	PF19789	NA	NA
UHGV-0028960_17	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0028960_17	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0028960_17	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0028960_17	Structural annotation	COG1694	NA	NA
UHGV-0028960_18	PHROG	phrog_236	nucleotide kinase	other
UHGV-0028960_18	UniRef90	UniRef90_A0A4Y8M597	NA	NA
UHGV-0028960_18	eggNOG-mapper	1268072.PSAB_05960	NA	NA
UHGV-0028960_18	Pfam	PF11753	NA	DUF3310
UHGV-0028960_19	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0028960_19	UniRef90	UniRef90_UPI00041F978E	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0028960_19	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0028960_19	Pfam	PF12684	NA	DUF3799
UHGV-0028960_19	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0028960_19	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0028960_20	PHROG	phrog_21613	NA	unknown function
UHGV-0028960_20	eggNOG-mapper	1007096.BAGW01000023_gene153	NA	NA
UHGV-0028960_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0028960_24	UniRef90	UniRef90_A0A2A7B941	Bro-N domain-containing protein	NA
UHGV-0028960_24	eggNOG-mapper	411471.SUBVAR_04667	BRO family, N-terminal domain	NA
UHGV-0028960_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0028960_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0028960_24	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0028960_26	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0028960_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0028960_26	UniRef90	UniRef90_UPI0016514086	helix-turn-helix domain-containing protein	NA
UHGV-0028960_26	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0028960_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0028960_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0028960_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0028960_28	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0028960_29	KOfam	K14059	int; integrase	NA
UHGV-0028960_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0028960_29	UniRef90	UniRef90_R7KSI7	Putative integrase	NA
UHGV-0028960_29	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0028960_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0028960_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0028960_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0028960_29	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0028960_30	PHROG	phrog_5070	NA	unknown function
UHGV-0028960_30	UniRef90	UniRef90_A0A2V1JRG3	Phage related protein (Fragment)	NA
UHGV-0028960_30	eggNOG-mapper	1094563.MCQ_00937	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0028960_30	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0028960_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0028960_33	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0028960_33	UniRef90	UniRef90_UPI0018E05DE9	PBSX family phage terminase large subunit	NA
UHGV-0028960_33	eggNOG-mapper	649747.HMPREF0083_05319	Terminase RNAseH like domain	NA
UHGV-0028960_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0028960_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0028960_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0028960_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0028960_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0028960_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0028960_34	UniRef90	UniRef90_UPI001C3CC14D	phage portal protein	NA
UHGV-0028960_34	eggNOG-mapper	1211035.CD30_13105	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0028960_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0028960_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0028960_35	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0028960_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0028960_35	COG	COG2369	NA	NA
UHGV-0028960_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0028960_36	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0028960_36	Structural annotation	PF14265	NA	NA
UHGV-0028960_37	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0028960_37	UniRef90	UniRef90_UPI00167B67E5	NA	NA
UHGV-0028960_37	eggNOG-mapper	398512.JQKC01000052_gene2672	NA	NA
UHGV-0028960_37	Pfam	PF17236	NA	DUF5309
UHGV-0028960_37	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0028960_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0028960_41	eggNOG-mapper	1209989.TepiRe1_1155	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0028960_41	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0028960_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0028960_45	eggNOG-mapper	1298920.KI911353_gene2068	domain protein	NA
UHGV-0028960_45	COG	COG1511	NA	NA
UHGV-0028960_46	PHROG	phrog_1194	NA	unknown function
UHGV-0028960_46	eggNOG-mapper	1293597.BN147_01415	NA	NA
UHGV-0028960_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0028960_47	PHROG	phrog_6616	tail protein	tail
UHGV-0028960_47	UniRef90	UniRef90_G5HGN8	Peptidase S74 domain-containing protein	NA
UHGV-0028960_47	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0028960_47	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0028960_47	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0028960_47	Structural annotation	PF07902, NF033848, COG3500	NA	NA