UHGV-0029075

Genome information

Genome length 37,450 bps

CDS count 57

Completeness 97.63% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0029075
vOTU ID	vOTU-081349
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_18_2379__NODE_1570_length_37450_cov_4.181976
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.66
Jumbo phage	No

Genome content
Genome length	37,450 bps
GC content	42.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.10%
Average CDS length	617.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0029075_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0029075_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0029075_1	UniRef90	UniRef90_UPI001D0DC2F1	recombinase family protein	NA
UHGV-0029075_1	eggNOG-mapper	1123075.AUDP01000026_gene425	Resolvase, N terminal domain	NA
UHGV-0029075_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0029075_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0029075_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0029075_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0029075_2	UniRef90	UniRef90_A0A1G9U2Y3	Zinc-ribbon domain-containing protein	NA
UHGV-0029075_2	eggNOG-mapper	1232453.BAIF02000010_gene3327	NA	NA
UHGV-0029075_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0029075_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0029075_3	UniRef90	UniRef90_A0A3R6UM93	XRE family transcriptional regulator	NA
UHGV-0029075_3	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0029075_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0029075_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0029075_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0029075_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0029075_6	UniRef90	UniRef90_A0A354I2Z2	XRE family transcriptional regulator	NA
UHGV-0029075_6	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0029075_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0029075_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0029075_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0029075_12	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0029075_12	UniRef90	UniRef90_UPI00156E233F	NA	NA
UHGV-0029075_12	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0029075_12	Pfam	PF11195	NA	DUF2829
UHGV-0029075_12	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0029075_13	PHROG	phrog_16447	NA	unknown function
UHGV-0029075_13	UniRef90	UniRef90_UPI000848B26D	NA	NA
UHGV-0029075_13	eggNOG-mapper	272562.CA_C1943	NA	NA
UHGV-0029075_13	Pfam	PF10083	NA	DUF2321
UHGV-0029075_13	COG	COG4306	NA	NA
UHGV-0029075_13	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0029075_15	eggNOG-mapper	1235792.C808_00637	NA	NA
UHGV-0029075_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0029075_18	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-0029075_18	Structural annotation	PF01446	NA	NA
UHGV-0029075_19	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0029075_19	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0029075_19	COG	COG0328	Ribonuclease HI	NA
UHGV-0029075_19	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0029075_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0029075_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0029075_21	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-0029075_21	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0029075_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-0029075_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0029075_21	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0029075_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0029075_22	PHROG	phrog_15077	NA	unknown function
UHGV-0029075_22	UniRef90	UniRef90_A0A1C5VK28	ParB-like nuclease domain	NA
UHGV-0029075_22	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0029075_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0029075_22	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0029075_24	UniRef90	UniRef90_A0A1Q6JLU8	PH domain-containing protein	NA
UHGV-0029075_24	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0029075_28	PHROG	phrog_3502	NA	unknown function
UHGV-0029075_28	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-0029075_28	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0029075_28	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0029075_28	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-0029075_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0029075_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0029075_30	UniRef90	UniRef90_A0A417PG59	Single-stranded DNA-binding protein	NA
UHGV-0029075_30	eggNOG-mapper	553973.CLOHYLEM_07405	Single-stranded DNA-binding protein	NA
UHGV-0029075_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0029075_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0029075_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0029075_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0029075_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0029075_32	PHROG	phrog_7566	NA	unknown function
UHGV-0029075_32	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0029075_33	PHROG	phrog_6072	NA	unknown function
UHGV-0029075_34	PHROG	phrog_11237	NA	unknown function
UHGV-0029075_34	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0029075_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0029075_36	UniRef90	UniRef90_A0A417PG49	NA	NA
UHGV-0029075_36	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0029075_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0029075_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0029075_37	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0029075_37	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-0029075_37	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0029075_37	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0029075_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0029075_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0029075_38	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-0029075_38	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0029075_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0029075_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0029075_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0029075_38	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0029075_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0029075_39	UniRef90	UniRef90_A0A417PG64	Phage portal protein	NA
UHGV-0029075_39	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0029075_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0029075_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0029075_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0029075_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0029075_40	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0029075_40	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0029075_40	UniRef90	UniRef90_A0A417PG92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0029075_40	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0029075_40	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0029075_40	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0029075_40	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0029075_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0029075_41	UniRef90	UniRef90_A0A417PG62	Phage major capsid protein	NA
UHGV-0029075_41	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0029075_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0029075_41	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0029075_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0029075_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0029075_41	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0029075_42	PHROG	phrog_749	NA	unknown function
UHGV-0029075_42	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0029075_43	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0029075_43	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0029075_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0029075_44	UniRef90	UniRef90_A0A417PG70	HK97 gp10 family phage protein	NA
UHGV-0029075_44	eggNOG-mapper	1235793.C809_04324	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0029075_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0029075_44	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0029075_45	PHROG	phrog_78	tail terminator	connector
UHGV-0029075_45	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0029075_45	Structural annotation	PF20765	NA	NA
UHGV-0029075_46	PHROG	phrog_88	major tail protein	tail
UHGV-0029075_46	UniRef90	UniRef90_UPI00157107A9	phage tail protein	NA
UHGV-0029075_46	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0029075_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0029075_46	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0029075_47	PHROG	phrog_709	NA	unknown function
UHGV-0029075_47	eggNOG-mapper	610130.Closa_0750	NA	NA
UHGV-0029075_47	Structural annotation	PF11836	NA	NA
UHGV-0029075_48	PHROG	phrog_3033	NA	unknown function
UHGV-0029075_48	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0029075_48	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0029075_49	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0029075_49	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0029075_49	UniRef90	UniRef90_A0A417PG60	Phage tail tape measure protein	NA
UHGV-0029075_49	eggNOG-mapper	1235799.C818_00430	Phage-related minor tail protein	NA
UHGV-0029075_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0029075_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0029075_49	COG	COG5283	Phage-related tail protein	NA
UHGV-0029075_49	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0029075_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0029075_50	UniRef90	UniRef90_A0A1M6MWV9	Phage tail protein	NA
UHGV-0029075_50	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0029075_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0029075_50	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0029075_51	PHROG	phrog_9886	NA	unknown function
UHGV-0029075_51	UniRef90	UniRef90_A0A417PG56	Peptidase S74 domain-containing protein	NA
UHGV-0029075_51	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-0029075_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0029075_51	COG	COG4926	Phage-related protein	NA
UHGV-0029075_51	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0029075_53	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-0029075_54	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0029075_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0029075_54	UniRef90	UniRef90_A0A373N0F6	Integrase	NA
UHGV-0029075_54	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0029075_54	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0029075_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0029075_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0029075_54	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0029075_55	PHROG	phrog_937	hemolysin	other
UHGV-0029075_55	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0029075_56	PHROG	phrog_443	holin	lysis
UHGV-0029075_56	UniRef90	UniRef90_UPI000E5CA950	holin	NA
UHGV-0029075_56	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0029075_56	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0029075_56	Structural annotation	PF16945	NA	NA
UHGV-0029075_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0029075_57	PHROG	phrog_3088	amidase	lysis
UHGV-0029075_57	UniRef90	UniRef90_UPI000E432ED8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0029075_57	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0029075_57	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0029075_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0029075_57	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0029075_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0029075_57	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA