UHGV-0029099

Genome information

Genome length 51,630 bps

CDS count 55

Completeness 97.35% (high-quality)

geNomad score 0.9463

Prediction confidence Confident

Genome information
Genome ID	UHGV-0029099
vOTU ID	vOTU-008773
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_6_1188__NODE_1720_length_51630_cov_1757.820748
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9463
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.09
Jumbo phage	No

Genome content
Genome length	51,630 bps
GC content	53.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.04%
Average CDS length	827.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0029099_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0029099_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0029099_1	UniRef90	UniRef90_A0A7X5E5X0	Adenylyl-sulfate reductase (Fragment)	NA
UHGV-0029099_1	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0029099_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0029099_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0029099_1	Structural annotation	PF01507, MF_00064, NF002537, COG0175	NA	NA
UHGV-0029099_5	KOfam	K15519	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	NA
UHGV-0029099_5	PHROG	phrog_761	thymidylate kinase	other
UHGV-0029099_5	UniRef90	UniRef90_A0A146K5R0	Deoxynucleoside kinase (Fragment)	NA
UHGV-0029099_5	eggNOG-mapper	44689.DDB0232027	deoxycytidine kinase activity	NA
UHGV-0029099_5	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-0029099_5	COG	COG1428	Deoxyadenosine/deoxycytidine kinase	NA
UHGV-0029099_5	Structural annotation	PF01712, MF_00165, NF005923, COG1428	NA	NA
UHGV-0029099_6	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0029099_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0029099_6	UniRef90	UniRef90_UPI00078C4212	DEAD/DEAH box helicase	NA
UHGV-0029099_6	eggNOG-mapper	1327974.R9ZZ72_9CAUD	helicase activity	NA
UHGV-0029099_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0029099_7	UniRef90	UniRef90_UPI00189DF765	adenine-specific methyltransferase EcoRI family protein	NA
UHGV-0029099_7	eggNOG-mapper	1235793.C809_02300	Adenine-specific methyltransferase EcoRI	NA
UHGV-0029099_7	PADLOC	MTase_II_00083	Type II methyltransferase	RM
UHGV-0029099_7	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-0029099_7	Structural annotation	PF13651, MF_00607, NF012222, COG2263	NA	NA
UHGV-0029099_9	KOfam	K08307	mltD, dniR; membrane-bound lytic murein transglycosylase D [EC:4.2.2.-]	NA
UHGV-0029099_9	PHROG	phrog_2013	lytic tail protein	tail
UHGV-0029099_9	UniRef90	UniRef90_UPI001E292167	lytic transglycosylase domain-containing protein	NA
UHGV-0029099_9	eggNOG-mapper	487796.Flav2ADRAFT_1494	Murein transglycosylase	NA
UHGV-0029099_9	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0029099_9	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0029099_14	PHROG	phrog_824	NA	unknown function
UHGV-0029099_14	UniRef90	UniRef90_A0A3D4L0J6	VRR-NUC domain-containing protein	NA
UHGV-0029099_14	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0029099_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0029099_14	Structural annotation	PF08774	NA	NA
UHGV-0029099_17	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0029099_17	UniRef90	UniRef90_UPI0004057A20	ERF family protein	NA
UHGV-0029099_17	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0029099_17	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0029099_17	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0029099_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-0029099_19	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0029099_20	PHROG	phrog_29	major head protein	head and packaging
UHGV-0029099_20	UniRef90	UniRef90_A0A4D6AN57	Major capsid protein	NA
UHGV-0029099_20	eggNOG-mapper	268407.PWYN_15685	Phage major capsid protein E	NA
UHGV-0029099_20	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0029099_20	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0029099_26	PHROG	phrog_279	tail sheath	tail
UHGV-0029099_26	UniRef90	UniRef90_UPI0018834991	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0029099_26	eggNOG-mapper	1120998.AUFC01000013_gene2967	PFAM Phage tail sheath protein	NA
UHGV-0029099_26	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0029099_26	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0029099_26	Structural annotation	PF04984, PF17482, PF17481, COG4386	NA	NA
UHGV-0029099_27	PHROG	phrog_365	tail protein	tail
UHGV-0029099_27	UniRef90	UniRef90_A0A7M1PXV4	Phage tail tube protein	NA
UHGV-0029099_27	eggNOG-mapper	768706.Desor_5390	Phage tail tube protein	NA
UHGV-0029099_27	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0029099_27	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0029099_28	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0029099_28	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0029099_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0029099_29	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0029099_31	PHROG	phrog_400	tail protein	tail
UHGV-0029099_31	UniRef90	UniRef90_UPI001F345164	hydrolase	NA
UHGV-0029099_31	eggNOG-mapper	642492.Clole_2744	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0029099_31	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0029099_33	Pfam	PF10934	NA	DUF2634
UHGV-0029099_33	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0029099_34	PHROG	phrog_6	baseplate protein	tail
UHGV-0029099_34	UniRef90	UniRef90_UPI0003B533CC	baseplate J/gp47 family protein	NA
UHGV-0029099_34	eggNOG-mapper	1121105.ATXL01000006_gene1391	Baseplate J-like protein	NA
UHGV-0029099_34	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0029099_34	COG	COG3299	NA	NA
UHGV-0029099_34	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0029099_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0029099_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0029099_39	UniRef90	UniRef90_A0A101H7I4	PBSX family phage terminase, large subunit	NA
UHGV-0029099_39	eggNOG-mapper	268407.PWYN_15645	Terminase RNAseH like domain	NA
UHGV-0029099_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0029099_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0029099_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0029099_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0029099_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0029099_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0029099_41	UniRef90	UniRef90_A0A0S2W0K9	Phage portal protein	NA
UHGV-0029099_41	eggNOG-mapper	1297617.JPJD01000059_gene2635	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0029099_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0029099_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0029099_43	PHROG	phrog_670	endolysin	lysis
UHGV-0029099_43	UniRef90	UniRef90_A0A4U8Q5J2	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0029099_43	eggNOG-mapper	883110.HMPREF9260_00641	Ami_2	NA
UHGV-0029099_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0029099_43	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0029099_44	PHROG	phrog_236	nucleotide kinase	other
UHGV-0029099_44	UniRef90	UniRef90_UPI00073E7D17	NA	NA
UHGV-0029099_44	Pfam	PF11753	NA	DUF3310
UHGV-0029099_45	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0029099_45	Pfam	PF10926	NA	DUF2800
UHGV-0029099_45	COG	COG2887	RecB family exonuclease	NA
UHGV-0029099_45	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0029099_46	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0029099_46	eggNOG-mapper	394503.Ccel_3057	virulence-associated E family protein	NA
UHGV-0029099_46	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0029099_46	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA