UHGV-0029445

Genome information

Genome length 41,305 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0029445
vOTU ID	vOTU-009890
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_8_1525__NODE_2095_length_41305_cov_9.605729
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.3
Jumbo phage	No

Genome content
Genome length	41,305 bps
GC content	52.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.58%
Average CDS length	853.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0029445_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0029445_1	PHROG	phrog_291	endolysin	lysis
UHGV-0029445_1	UniRef90	UniRef90_A0A355UYJ0	Dockerin domain-containing protein	NA
UHGV-0029445_1	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0029445_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0029445_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0029445_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0029445_2	PHROG	phrog_1129	holin	lysis
UHGV-0029445_2	UniRef90	UniRef90_UPI0002E32382	phage holin family protein	NA
UHGV-0029445_2	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0029445_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0029445_2	Structural annotation	PF06946	NA	NA
UHGV-0029445_3	PHROG	phrog_937	hemolysin	other
UHGV-0029445_3	UniRef90	UniRef90_R5GGW2	Phosphoglucosamine mutase	NA
UHGV-0029445_4	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-0029445_4	PHROG	phrog_22978	NA	unknown function
UHGV-0029445_4	UniRef90	UniRef90_U2UX12	PBECR5 domain-containing protein	NA
UHGV-0029445_4	eggNOG-mapper	1321782.HMPREF1986_00356	NA	NA
UHGV-0029445_4	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-0029445_4	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0029445_4	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0029445_5	PHROG	phrog_2307	L-alanyl-D-glutamate peptidase	other
UHGV-0029445_5	UniRef90	UniRef90_U2UCQ7	NA	NA
UHGV-0029445_5	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0029445_7	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0029445_7	UniRef90	UniRef90_U2UXE8	Peptidase S74 domain-containing protein	NA
UHGV-0029445_7	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0029445_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0029445_7	Structural annotation	NF041249	NA	NA
UHGV-0029445_8	UniRef90	UniRef90_U2W5G2	Peptidase S74 domain-containing protein	NA
UHGV-0029445_8	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0029445_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0029445_8	Structural annotation	NF041249	NA	NA
UHGV-0029445_9	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0029445_9	UniRef90	UniRef90_A0A356L0N1	Peptidase S74 domain-containing protein (Fragment)	NA
UHGV-0029445_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0029445_9	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0029445_9	Structural annotation	NF041249	NA	NA
UHGV-0029445_10	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0029445_10	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0029445_10	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0029445_11	PHROG	phrog_12105	NA	unknown function
UHGV-0029445_12	PHROG	phrog_134	NA	unknown function
UHGV-0029445_12	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-0029445_12	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0029445_12	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0029445_12	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0029445_12	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0029445_14	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0029445_14	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0029445_14	UniRef90	UniRef90_A0A395VDP3	Reverse transcriptase domain-containing protein	NA
UHGV-0029445_14	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0029445_14	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0029445_14	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0029445_14	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0029445_14	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0029445_16	eggNOG-mapper	525254.HMPREF0072_1280	NA	NA
UHGV-0029445_16	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0029445_17	PHROG	phrog_19280	NA	unknown function
UHGV-0029445_17	UniRef90	UniRef90_A0A395VC32	NA	NA
UHGV-0029445_17	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0029445_17	Pfam	PF19789	NA	DUF6273
UHGV-0029445_17	Structural annotation	PF19789	NA	NA
UHGV-0029445_20	PHROG	phrog_25888	NA	unknown function
UHGV-0029445_20	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0029445_21	PHROG	phrog_15239	NA	unknown function
UHGV-0029445_22	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0029445_22	UniRef90	UniRef90_UPI0015B50BE5	N4-gp56 family major capsid protein	NA
UHGV-0029445_22	eggNOG-mapper	1321782.HMPREF1986_00347	NA	NA
UHGV-0029445_22	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0029445_22	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0029445_23	PHROG	phrog_13908	NA	unknown function
UHGV-0029445_23	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-0029445_24	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0029445_24	COG	COG2868	NA	NA
UHGV-0029445_25	PHROG	phrog_156	portal protein	head and packaging
UHGV-0029445_25	eggNOG-mapper	1321782.HMPREF1986_00344	NA	NA
UHGV-0029445_25	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0029445_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0029445_26	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0029445_26	UniRef90	UniRef90_U2W5F1	Phage terminase, large subunit, PBSX family	NA
UHGV-0029445_26	eggNOG-mapper	1321782.HMPREF1986_00343	NA	NA
UHGV-0029445_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0029445_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0029445_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0029445_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0029445_27	UniRef90	UniRef90_UPI00041A7162	helix-turn-helix domain-containing protein	NA
UHGV-0029445_27	eggNOG-mapper	1321782.HMPREF1986_00342	transposase activity	NA
UHGV-0029445_27	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0029445_27	Structural annotation	PF07141	NA	NA
UHGV-0029445_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0029445_30	eggNOG-mapper	1321782.HMPREF1986_00335	NA	NA
UHGV-0029445_30	Structural annotation	PF11726	NA	NA
UHGV-0029445_36	PHROG	phrog_6058	NA	unknown function
UHGV-0029445_42	Structural annotation	PF21662, NF038384, TIGR03090	NA	NA
UHGV-0029445_44	UniRef90	UniRef90_UPI00041C3C71	helix-turn-helix domain-containing protein	NA
UHGV-0029445_44	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0029445_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0029445_44	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0029445_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0029445_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0029445_45	UniRef90	UniRef90_A0A3A9CUU7	XRE family transcriptional regulator	NA
UHGV-0029445_45	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-0029445_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0029445_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0029445_46	KOfam	K14059	int; integrase	NA
UHGV-0029445_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0029445_46	UniRef90	UniRef90_A0A7V7QHM7	Site-specific integrase	NA
UHGV-0029445_46	eggNOG-mapper	697329.Rumal_2496	Belongs to the 'phage' integrase family	NA
UHGV-0029445_46	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0029445_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0029445_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0029445_46	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA