UHGV-0029747

Genome information

Genome length 35,085 bps

CDS count 55

Completeness 90.42% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0029747
vOTU ID	vOTU-067098
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_M_19_2499__NODE_2052_length_35085_cov_8.990374
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.25
Jumbo phage	No

Genome content
Genome length	35,085 bps
GC content	55.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.39%
Average CDS length	578.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0029747_1	KOfam	K14059	int; integrase	NA
UHGV-0029747_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0029747_1	UniRef90	UniRef90_UPI00130DFBFE	tyrosine-type recombinase/integrase	NA
UHGV-0029747_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0029747_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0029747_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0029747_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0029747_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0029747_4	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-0029747_4	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0029747_5	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0029747_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0029747_5	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-0029747_5	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-0029747_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0029747_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0029747_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0029747_6	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0029747_6	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0029747_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0029747_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0029747_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0029747_10	Structural annotation	NF041909	NA	NA
UHGV-0029747_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0029747_11	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0029747_11	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0029747_11	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0029747_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0029747_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0029747_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0029747_11	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0029747_11	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0029747_12	UniRef90	UniRef90_A0A2J4JRR2	XRE family transcriptional regulator	NA
UHGV-0029747_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0029747_13	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0029747_13	eggNOG-mapper	866775.HMPREF9243_0425	NA	NA
UHGV-0029747_13	Pfam	PF05339	NA	DUF739
UHGV-0029747_13	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0029747_13	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0029747_17	PHROG	phrog_38771	NA	unknown function
UHGV-0029747_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0029747_18	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0029747_18	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0029747_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0029747_18	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0029747_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0029747_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0029747_19	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0029747_19	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0029747_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0029747_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0029747_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0029747_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0029747_19	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0029747_22	PHROG	phrog_15768	NA	unknown function
UHGV-0029747_22	UniRef90	UniRef90_A0A6N7TND1	NA	NA
UHGV-0029747_22	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0029747_22	Pfam	PF19808	NA	DUF6291
UHGV-0029747_22	Structural annotation	PF19808	NA	NA
UHGV-0029747_23	Structural annotation	PF11417	NA	NA
UHGV-0029747_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0029747_24	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0029747_24	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0029747_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0029747_24	Structural annotation	PF05565	NA	NA
UHGV-0029747_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0029747_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0029747_26	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-0029747_26	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0029747_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0029747_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0029747_26	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0029747_27	PHROG	phrog_6568	NA	unknown function
UHGV-0029747_27	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0029747_28	PHROG	phrog_3253	NA	unknown function
UHGV-0029747_28	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0029747_28	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0029747_28	Structural annotation	PF18618	NA	NA
UHGV-0029747_31	PHROG	phrog_3136	NA	unknown function
UHGV-0029747_31	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0029747_31	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0029747_31	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0029747_31	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0029747_32	KOfam	K03700	recU; recombination protein U	NA
UHGV-0029747_32	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0029747_32	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-0029747_32	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0029747_32	Pfam	PF03838	Recombination protein U	RecU
UHGV-0029747_32	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0029747_32	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0029747_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0029747_34	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0029747_36	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0029747_36	UniRef90	UniRef90_A0A3F3JUE2	ParB domain-containing protein	NA
UHGV-0029747_36	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0029747_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0029747_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0029747_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0029747_37	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0029747_37	UniRef90	UniRef90_A0A6N7S662	ParB domain-containing protein	NA
UHGV-0029747_37	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0029747_37	Structural annotation	PF00331, MF_00168, NF040790, COG0069	NA	NA
UHGV-0029747_38	PHROG	phrog_27044	NA	unknown function
UHGV-0029747_38	UniRef90	UniRef90_A0A3F3JUD8	Citrulline cluster-linked protein	NA
UHGV-0029747_38	eggNOG-mapper	428126.CLOSPI_01525	NA	NA
UHGV-0029747_38	Pfam	PF06177	QueT transporter	QueT
UHGV-0029747_38	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0029747_38	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0029747_39	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0029747_39	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0029747_39	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0029747_39	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0029747_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0029747_40	PHROG	phrog_10250	NA	unknown function
UHGV-0029747_40	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0029747_40	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0029747_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0029747_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0029747_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0029747_41	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-0029747_41	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0029747_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0029747_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0029747_42	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-0029747_42	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0029747_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0029747_42	COG	COG2369	NA	NA
UHGV-0029747_42	Structural annotation	PF06152	NA	NA
UHGV-0029747_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0029747_45	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0029747_45	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0029747_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0029747_45	Structural annotation	PF06810	NA	NA
UHGV-0029747_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0029747_46	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0029747_46	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0029747_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0029747_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0029747_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0029747_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0029747_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0029747_48	PHROG	phrog_3366	NA	unknown function
UHGV-0029747_48	Structural annotation	PF20536	NA	NA
UHGV-0029747_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0029747_49	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-0029747_49	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-0029747_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0029747_49	Structural annotation	PF11114	NA	NA
UHGV-0029747_50	PHROG	phrog_3266	tail completion	connector
UHGV-0029747_50	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0029747_50	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0029747_50	Structural annotation	PF12691	NA	NA
UHGV-0029747_51	PHROG	phrog_820	major tail protein	tail
UHGV-0029747_51	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0029747_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0029747_52	PHROG	phrog_4450	NA	unknown function
UHGV-0029747_52	Pfam	PF20378	NA	DUF6673
UHGV-0029747_52	Structural annotation	PF20378	NA	NA
UHGV-0029747_53	PHROG	phrog_706	NA	unknown function
UHGV-0029747_53	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0029747_53	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0029747_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0029747_53	Structural annotation	PF06854	NA	NA
UHGV-0029747_54	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0029747_54	UniRef90	UniRef90_E2ZNP7	Phage tail tape measure protein, TP901 family	NA
UHGV-0029747_54	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0029747_54	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0029747_54	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0029747_54	COG	COG5283	Phage-related tail protein	NA
UHGV-0029747_54	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0029747_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0029747_55	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0029747_55	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0029747_55	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA