| UHGV-0030240_1 | PHROG | phrog_478 | site-specific recombination directionality factor RDF | integration and excision |
| UHGV-0030240_1 | UniRef90 | UniRef90_R6E548 | Prophage pi1 protein 29 | NA |
| UHGV-0030240_1 | eggNOG-mapper | 1111121.HMPREF1247_0834 | NA | NA |
| UHGV-0030240_4 | PHROG | phrog_22543 | NA | unknown function |
| UHGV-0030240_4 | UniRef90 | UniRef90_A0A8D9PDK2 | Zinc-ribbon containing domain | NA |
| UHGV-0030240_7 | KOfam | K00558 | DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] | NA |
| UHGV-0030240_7 | PHROG | phrog_116 | DNA methyltransferase | other |
| UHGV-0030240_7 | UniRef90 | UniRef90_A0A316NA61 | DNA (cytosine-5-)-methyltransferase | NA |
| UHGV-0030240_7 | eggNOG-mapper | 718252.FP2_16350 | C-5 cytosine-specific DNA methylase | NA |
| UHGV-0030240_7 | PADLOC | oMTase_00004 | orphan methyltransferase | RM |
| UHGV-0030240_7 | Pfam | PF00145 | C-5 cytosine-specific DNA methylase | DNA_methylase |
| UHGV-0030240_7 | NCBIFam | TIGR00675.1 | DNA (cytosine-5-)-methyltransferase | NA |
| UHGV-0030240_7 | COG | COG0270 | DNA-cytosine methylase | NA |
| UHGV-0030240_9 | KOfam | K01160 | rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] | NA |
| UHGV-0030240_9 | PHROG | phrog_4632 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_9 | UniRef90 | UniRef90_A0A7X8IB41 | RusA family crossover junction endodeoxyribonuclease | NA |
| UHGV-0030240_9 | eggNOG-mapper | 469604.HMPREF0946_00819 | NA | NA |
| UHGV-0030240_9 | Structural annotation | PF05866, NF007305, COG4570 | NA | NA |
| UHGV-0030240_10 | KOfam | K00571 | E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] | NA |
| UHGV-0030240_10 | PHROG | phrog_23224 | DNA methyltransferase | other |
| UHGV-0030240_10 | UniRef90 | UniRef90_UPI000C7E7D35 | site-specific DNA-methyltransferase | NA |
| UHGV-0030240_10 | eggNOG-mapper | 718252.FP2_06750 | DNA methylase | NA |
| UHGV-0030240_10 | PADLOC | MTase_II_00172 | Type II methyltransferase | RM |
| UHGV-0030240_10 | Pfam | PF01555 | DNA methylase | N6_N4_Mtase |
| UHGV-0030240_10 | COG | COG0863 | DNA modification methylase | NA |
| UHGV-0030240_10 | Structural annotation | PF01555, NF010253, COG0863 | NA | NA |
| UHGV-0030240_13 | PHROG | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_13 | UniRef90 | UniRef90_UPI001F131308 | replication protein | NA |
| UHGV-0030240_13 | eggNOG-mapper | 1095750.HMPREF9970_1674 | NA | NA |
| UHGV-0030240_13 | Structural annotation | PF01978, NF000243, COG0735 | NA | NA |
| UHGV-0030240_14 | KOfam | K03111 | ssb; single-strand DNA-binding protein | NA |
| UHGV-0030240_14 | PHROG | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_14 | UniRef90 | UniRef90_R6LLA3 | Single-stranded DNA-binding protein | NA |
| UHGV-0030240_14 | eggNOG-mapper | 1007096.BAGW01000023_gene151 | Single-strand binding protein family | NA |
| UHGV-0030240_14 | Pfam | PF00436 | Single-strand binding protein family | SSB |
| UHGV-0030240_14 | NCBIFam | TIGR00621.2 | single-stranded DNA-binding protein | NA |
| UHGV-0030240_14 | COG | COG0629 | Single-stranded DNA-binding protein | NA |
| UHGV-0030240_14 | HAMAP | MF_00984 | Single-stranded DNA-binding protein | NA |
| UHGV-0030240_14 | Structural annotation | PF00436, MF_00984, NF005241, COG0629 | NA | NA |
| UHGV-0030240_15 | PHROG | phrog_7370 | HNH endonuclease | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_15 | UniRef90 | UniRef90_UPI001C122365 | HNH endonuclease | NA |
| UHGV-0030240_15 | Pfam | PF01844 | HNH endonuclease | HNH |
| UHGV-0030240_16 | PHROG | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_16 | UniRef90 | UniRef90_A0A8D9PDS2 | NinB protein | NA |
| UHGV-0030240_16 | eggNOG-mapper | 445972.ANACOL_01825 | NA | NA |
| UHGV-0030240_16 | Structural annotation | PF05772 | NA | NA |
| UHGV-0030240_17 | PHROG | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_17 | UniRef90 | UniRef90_A0A3D1PJF8 | Single-stranded DNA-binding protein | NA |
| UHGV-0030240_17 | eggNOG-mapper | 1304866.K413DRAFT_1196 | ERF superfamily | NA |
| UHGV-0030240_17 | Pfam | PF04404 | ERF superfamily | ERF |
| UHGV-0030240_17 | COG | COG0629 | Single-stranded DNA-binding protein | NA |
| UHGV-0030240_17 | Structural annotation | PF04404, COG4712 | NA | NA |
| UHGV-0030240_18 | PHROG | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism |
| UHGV-0030240_18 | UniRef90 | UniRef90_A0A1C5N4H2 | Siphovirus Gp157 | NA |
| UHGV-0030240_18 | eggNOG-mapper | 1410670.JHXF01000015_gene2268 | Siphovirus Gp157 | NA |
| UHGV-0030240_18 | Pfam | PF05565 | Siphovirus Gp157 | Sipho_Gp157 |
| UHGV-0030240_18 | Structural annotation | PF05565, NF002139 | NA | NA |
| UHGV-0030240_19 | PHROG | phrog_4973 | NA | unknown function |
| UHGV-0030240_19 | UniRef90 | UniRef90_A0A3D3Y5F2 | DNA-binding protein | NA |
| UHGV-0030240_19 | eggNOG-mapper | 935261.JAGL01000009_gene1175 | Helix-turn-helix domain | NA |
| UHGV-0030240_19 | Pfam | PF14090 | Helix-turn-helix domain | HTH_39 |
| UHGV-0030240_19 | Structural annotation | PF14090, NF040939, COG4738 | NA | NA |
| UHGV-0030240_21 | Structural annotation | PF14354, TIGR03655 | NA | NA |
| UHGV-0030240_24 | Pfam | PF13560 | Helix-turn-helix domain | HTH_31 |
| UHGV-0030240_24 | Structural annotation | PF13560, MF_00535, NF041951, COG3655 | NA | NA |
| UHGV-0030240_27 | PHROG | phrog_2657 | transcriptional regulator | transcription regulation |
| UHGV-0030240_27 | UniRef90 | UniRef90_J0WS26 | Phage regulatory protein Rha | NA |
| UHGV-0030240_27 | eggNOG-mapper | 1203606.HMPREF1526_00304 | Phage regulatory protein Rha (Phage_pRha) | NA |
| UHGV-0030240_27 | Pfam | PF09669 | Phage regulatory protein Rha (Phage_pRha) | Phage_pRha |
| UHGV-0030240_27 | COG | COG3646 | Phage regulatory protein Rha | NA |
| UHGV-0030240_27 | Structural annotation | PF09669, TIGR02681, COG3646 | NA | NA |
| UHGV-0030240_28 | KOfam | K22300 | dicA; HTH-type transcriptional regulator, cell division transcriptional repressor | NA |
| UHGV-0030240_28 | UniRef90 | UniRef90_A0A1Y3ZNM0 | HTH cro/C1-type domain-containing protein | NA |
| UHGV-0030240_28 | eggNOG-mapper | 693746.OBV_25500 | Cro/C1-type HTH DNA-binding domain | NA |
| UHGV-0030240_28 | Pfam | PF01381 | Helix-turn-helix | HTH_3 |
| UHGV-0030240_28 | COG | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain | NA |
| UHGV-0030240_28 | Structural annotation | PF01381, NF041951, COG1476 | NA | NA |
| UHGV-0030240_29 | UniRef90 | UniRef90_A0A8J6J841 | Helix-turn-helix domain-containing protein | NA |
| UHGV-0030240_29 | eggNOG-mapper | 1160721.RBI_I00363 | Cro/C1-type HTH DNA-binding domain | NA |
| UHGV-0030240_29 | Structural annotation | PF01381, NF041951, COG3655 | NA | NA |
| UHGV-0030240_31 | Pfam | PF01381 | Helix-turn-helix | HTH_3 |
| UHGV-0030240_31 | Structural annotation | PF01381, MF_02017, TIGR03070, COG3655 | NA | NA |
| UHGV-0030240_32 | KOfam | K14059 | int; integrase | NA |
| UHGV-0030240_32 | PHROG | phrog_1 | integrase | integration and excision |
| UHGV-0030240_32 | UniRef90 | UniRef90_UPI001C124E9B | site-specific integrase | NA |
| UHGV-0030240_32 | eggNOG-mapper | 1226322.HMPREF1545_00144 | Belongs to the 'phage' integrase family | NA |
| UHGV-0030240_32 | Pfam | PF14659 | Phage integrase, N-terminal SAM-like domain | Phage_int_SAM_3 |
| UHGV-0030240_32 | Pfam | PF00589 | Phage integrase family | Phage_integrase |
| UHGV-0030240_32 | COG | COG0582 | Integrase/recombinase, includes phage integrase | NA |
| UHGV-0030240_32 | Structural annotation | PF00589, PF12167, MF_02055, NF040815, COG4974 | NA | NA |
| UHGV-0030240_33 | eggNOG-mapper | 1408437.JNJN01000043_gene801 | NA | NA |
| UHGV-0030240_34 | Structural annotation | PF18573, NF033147 | NA | NA |
| UHGV-0030240_35 | PHROG | phrog_16490 | NA | unknown function |
| UHGV-0030240_35 | eggNOG-mapper | 476272.RUMHYD_01770 | NA | NA |
| UHGV-0030240_36 | PHROG | phrog_22984 | NA | unknown function |
| UHGV-0030240_38 | UniRef90 | UniRef90_A0A8D9PDQ3 | ECF sigma factor | NA |
| UHGV-0030240_38 | Structural annotation | PF04545, MF_00674, NF009179, COG1342 | NA | NA |
| UHGV-0030240_39 | PHROG | phrog_22978 | NA | unknown function |
| UHGV-0030240_39 | UniRef90 | UniRef90_A0A1Y4WLF7 | PBECR5 domain-containing protein | NA |
| UHGV-0030240_39 | eggNOG-mapper | 1410650.JHWL01000003_gene2814 | NA | NA |
| UHGV-0030240_39 | Pfam | PF18814 | phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5 | PBECR5 |
| UHGV-0030240_40 | eggNOG-mapper | 1226322.HMPREF1545_00786 | NA | NA |
| UHGV-0030240_41 | Pfam | PF07889 | NA | DUF1664 |
| UHGV-0030240_42 | PHROG | phrog_511 | internal virion protein | head and packaging |
| UHGV-0030240_42 | UniRef90 | UniRef90_A0A8D9UH72 | Stabilization protein (Fragment) | NA |
| UHGV-0030240_42 | eggNOG-mapper | 1226322.HMPREF1545_00785 | NA | NA |
| UHGV-0030240_42 | Structural annotation | PF11134, TIGR03300, NF038126, COG1520 | NA | NA |
| UHGV-0030240_43 | PHROG | phrog_12105 | NA | unknown function |
| UHGV-0030240_43 | eggNOG-mapper | 1226322.HMPREF1545_03850 | NA | NA |
| UHGV-0030240_44 | KOfam | K08640 | E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] | NA |
| UHGV-0030240_44 | PHROG | phrog_18955 | NA | unknown function |
| UHGV-0030240_44 | UniRef90 | UniRef90_UPI001C035E39 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | NA |
| UHGV-0030240_44 | eggNOG-mapper | 1235797.C816_04171 | Peptidase M15 | NA |
| UHGV-0030240_44 | Pfam | PF09992 | Phosphodiester glycosidase | NAGPA |
| UHGV-0030240_44 | Pfam | PF08291 | Peptidase M15 | Peptidase_M15_3 |
| UHGV-0030240_44 | COG | COG3108 | NA | NA |
| UHGV-0030240_44 | Structural annotation | PF09992, PF08291, COG4632, COG3108 | NA | NA |
| UHGV-0030240_45 | PHROG | phrog_199 | holin | lysis |
| UHGV-0030240_45 | UniRef90 | UniRef90_K1UL76 | Holin, toxin secretion/phage lysis | NA |
| UHGV-0030240_45 | eggNOG-mapper | 411467.BACCAP_00280 | Bacteriophage holin family | NA |
| UHGV-0030240_45 | Pfam | PF05105 | Bacteriophage holin family | Phage_holin_4_1 |
| UHGV-0030240_45 | NCBIFam | TIGR01593.1 | toxin secretion/phage lysis holin | NA |
| UHGV-0030240_45 | COG | COG4824 | Phage-related holin (Lysis protein) | NA |
| UHGV-0030240_45 | Structural annotation | PF05105, TIGR01593, COG4824 | NA | NA |
| UHGV-0030240_47 | UniRef90 | UniRef90_A0A4D7AHL6 | Collagen-like protein | NA |
| UHGV-0030240_47 | eggNOG-mapper | 1226322.HMPREF1545_00064 | NA | NA |
| UHGV-0030240_48 | Structural annotation | PF10651 | NA | NA |
| UHGV-0030240_50 | PHROG | phrog_1357 | major head protein | head and packaging |
| UHGV-0030240_50 | UniRef90 | UniRef90_UPI001D02EBA7 | N4-gp56 family major capsid protein | NA |
| UHGV-0030240_50 | eggNOG-mapper | 1203606.HMPREF1526_02746 | NA | NA |
| UHGV-0030240_50 | Pfam | PF13252 | NA | DUF4043 |
| UHGV-0030240_50 | NCBIFam | TIGR04387.1 | N4-gp56 family major capsid protein | NA |
| UHGV-0030240_50 | Structural annotation | PF13252, MF_04119, TIGR04387, COG4653 | NA | NA |
| UHGV-0030240_51 | PHROG | phrog_13908 | NA | unknown function |
| UHGV-0030240_51 | eggNOG-mapper | 1410650.JHWL01000003_gene2831 | NA | NA |
| UHGV-0030240_52 | KOfam | K07584 | NA | NA |
| UHGV-0030240_52 | PHROG | phrog_4478 | peptidase | other |
| UHGV-0030240_52 | UniRef90 | UniRef90_UPI0005504E05 | ribosomal-processing cysteine protease Prp | NA |
| UHGV-0030240_52 | eggNOG-mapper | 273068.TTE0914 | Cysteine protease Prp | NA |
| UHGV-0030240_52 | Pfam | PF04327 | Cysteine protease Prp | Peptidase_Prp |
| UHGV-0030240_52 | COG | COG2868 | NA | NA |
| UHGV-0030240_52 | Structural annotation | PF04327, NF011124, COG2868 | NA | NA |
| UHGV-0030240_53 | PHROG | phrog_156 | portal protein | head and packaging |
| UHGV-0030240_53 | UniRef90 | UniRef90_A0A8D9UH10 | Portal protein | NA |
| UHGV-0030240_53 | eggNOG-mapper | 748224.HMPREF9436_02547 | NA | NA |
| UHGV-0030240_53 | Structural annotation | PF16510, MF_04120, TIGR01538, COG5518 | NA | NA |
| UHGV-0030240_54 | KOfam | K06909 | xtmB; phage terminase large subunit | NA |
| UHGV-0030240_54 | PHROG | phrog_979 | terminase large subunit | head and packaging |
| UHGV-0030240_54 | UniRef90 | UniRef90_UPI001BB47C17 | terminase family protein | NA |
| UHGV-0030240_54 | eggNOG-mapper | 748224.HMPREF9436_01395 | Terminase-like family | NA |
| UHGV-0030240_54 | Pfam | PF03237 | Terminase large subunit, T4likevirus-type, N-terminal | Terminase_6N |
| UHGV-0030240_54 | COG | COG1783 | Phage terminase large subunit | NA |
| UHGV-0030240_54 | Structural annotation | PF04466, PF20454, MF_04148, TIGR01547, COG1783 | NA | NA |
| UHGV-0030240_55 | PHROG | phrog_606 | terminase small subunit | head and packaging |
| UHGV-0030240_55 | UniRef90 | UniRef90_UPI00195648BB | DNA-packaging protein | NA |
| UHGV-0030240_55 | eggNOG-mapper | 397290.C810_05185 | DNA-packaging protein gp3 | NA |
| UHGV-0030240_55 | Pfam | PF16677 | DNA-packaging protein gp3 | GP3_package |
| UHGV-0030240_55 | Structural annotation | PF16677 | NA | NA |
| UHGV-0030240_56 | PHROG | phrog_8 | transcriptional regulator | transcription regulation |
| UHGV-0030240_56 | UniRef90 | UniRef90_A0A1C6J963 | Helix-turn-helix | NA |
| UHGV-0030240_56 | Pfam | PF01381 | Helix-turn-helix | HTH_3 |
| UHGV-0030240_56 | COG | COG1396 | Transcriptional regulator, contains XRE-family HTH domain | NA |
| UHGV-0030240_57 | KOfam | K02647 | cdaR; carbohydrate diacid regulator | NA |
| UHGV-0030240_57 | UniRef90 | UniRef90_UPI00164DE10C | helix-turn-helix domain-containing protein | NA |
| UHGV-0030240_57 | eggNOG-mapper | 1301100.HG529387_gene5110 | Putative sugar diacid recognition | NA |
| UHGV-0030240_57 | Pfam | PF13556 | PucR C-terminal helix-turn-helix domain | HTH_30 |
| UHGV-0030240_57 | COG | COG3835 | Sugar diacid utilization regulator CdaR | NA |
| UHGV-0030240_57 | Structural annotation | PF13556, TIGR00637, COG2771 | NA | NA |