UHGV-0030718

Genome information

Genome length 33,668 bps

CDS count 49

Completeness 95.69% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0030718
vOTU ID	vOTU-012832
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_18_2379__NODE_1849_length_33668_cov_17.813760
BioSample	SAMEA4766268
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.15
Jumbo phage	No

Genome content
Genome length	33,668 bps
GC content	39.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	89.90%
Average CDS length	620.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0030718_3	PHROG	phrog_10678	NA	unknown function
UHGV-0030718_4	UniRef90	UniRef90_A0A6I3PLH9	Helix-turn-helix domain-containing protein	NA
UHGV-0030718_4	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0030718_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0030718_4	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0030718_5	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0030718_5	UniRef90	UniRef90_A0A412L7Y5	Site-specific DNA-methyltransferase	NA
UHGV-0030718_5	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-0030718_5	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0030718_5	COG	COG0863	DNA modification methylase	NA
UHGV-0030718_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0030718_6	PHROG	phrog_20388	endolysin	lysis
UHGV-0030718_6	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0030718_6	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0030718_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0030718_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0030718_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0030718_6	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0030718_7	PHROG	phrog_918	NA	unknown function
UHGV-0030718_7	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0030718_7	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0030718_7	Pfam	PF19791	NA	DUF6275
UHGV-0030718_7	Structural annotation	PF19791	NA	NA
UHGV-0030718_8	PHROG	phrog_18591	NA	unknown function
UHGV-0030718_8	eggNOG-mapper	272624.lpg2561	NA	NA
UHGV-0030718_9	PHROG	phrog_443	holin	lysis
UHGV-0030718_9	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0030718_9	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0030718_9	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0030718_9	Structural annotation	PF16945	NA	NA
UHGV-0030718_10	PHROG	phrog_1863	NA	unknown function
UHGV-0030718_10	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0030718_10	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0030718_12	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-0030718_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0030718_13	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0030718_13	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0030718_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0030718_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0030718_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0030718_14	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0030718_14	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0030718_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0030718_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0030718_15	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0030718_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0030718_15	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0030718_15	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0030718_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0030718_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0030718_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0030718_16	Structural annotation	PF11836	NA	NA
UHGV-0030718_17	PHROG	phrog_88	major tail protein	tail
UHGV-0030718_17	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0030718_17	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0030718_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0030718_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0030718_18	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0030718_18	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0030718_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0030718_18	Structural annotation	TIGR01725	NA	NA
UHGV-0030718_19	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0030718_20	PHROG	phrog_19734	NA	unknown function
UHGV-0030718_20	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0030718_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0030718_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0030718_21	PHROG	phrog_749	NA	unknown function
UHGV-0030718_21	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0030718_21	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0030718_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0030718_22	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0030718_22	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0030718_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0030718_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0030718_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0030718_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0030718_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0030718_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0030718_23	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0030718_23	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0030718_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0030718_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0030718_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0030718_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0030718_24	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0030718_24	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0030718_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0030718_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0030718_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0030718_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0030718_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0030718_25	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0030718_25	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0030718_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0030718_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0030718_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0030718_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0030718_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0030718_26	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0030718_26	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0030718_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0030718_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0030718_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0030718_27	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0030718_27	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0030718_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0030718_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0030718_28	Structural annotation	TIGR01636	NA	NA
UHGV-0030718_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0030718_29	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0030718_29	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0030718_31	PHROG	phrog_8684	NA	unknown function
UHGV-0030718_31	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0030718_31	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0030718_31	Pfam	PF09643	YopX protein	YopX
UHGV-0030718_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0030718_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0030718_32	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0030718_32	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0030718_32	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0030718_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0030718_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0030718_32	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0030718_34	PHROG	phrog_824	NA	unknown function
UHGV-0030718_34	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0030718_34	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0030718_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0030718_34	Structural annotation	PF08774	NA	NA
UHGV-0030718_35	PHROG	phrog_24518	NA	unknown function
UHGV-0030718_35	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0030718_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0030718_37	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0030718_37	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0030718_37	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0030718_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0030718_37	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0030718_37	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0030718_37	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0030718_40	Structural annotation	COG1862	NA	NA
UHGV-0030718_41	PHROG	phrog_6058	NA	unknown function
UHGV-0030718_41	Structural annotation	NF033787	NA	NA
UHGV-0030718_42	PHROG	phrog_8684	NA	unknown function
UHGV-0030718_42	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0030718_42	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0030718_42	Pfam	PF09643	YopX protein	YopX
UHGV-0030718_42	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0030718_42	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0030718_43	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0030718_43	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0030718_43	Structural annotation	PF14354	NA	NA
UHGV-0030718_45	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0030718_45	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0030718_46	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0030718_46	eggNOG-mapper	1408823.AXUS01000025_gene2653	NA	NA
UHGV-0030718_46	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0030718_47	PHROG	phrog_1914	NA	unknown function
UHGV-0030718_47	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0030718_47	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0030718_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0030718_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0030718_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0030718_48	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0030718_48	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0030718_48	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0030718_49	KOfam	K14059	int; integrase	NA
UHGV-0030718_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0030718_49	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0030718_49	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0030718_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0030718_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0030718_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA