UHGV-0030750

Genome information

Genome length 44,457 bps

CDS count 64

Completeness 95.36% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0030750
vOTU ID	vOTU-068697
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_18_2610__NODE_1831_length_44457_cov_5.133078
BioSample	SAMEA4766357
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.47
Jumbo phage	No

Genome content
Genome length	44,457 bps
GC content	46.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.54%
Average CDS length	626.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0030750_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0030750_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0030750_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0030750_8	PHROG	phrog_9467	NA	unknown function
UHGV-0030750_8	UniRef90	UniRef90_UPI0018C8333C	Gp49 family protein	NA
UHGV-0030750_8	eggNOG-mapper	573061.Clocel_3545	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0030750_8	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0030750_8	dbAPIS	APIS043	NA	NA
UHGV-0030750_8	Structural annotation	PF13876	NA	NA
UHGV-0030750_9	PHROG	phrog_26249	NA	unknown function
UHGV-0030750_9	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0030750_9	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0030750_9	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0030750_9	COG	COG1388	LysM repeat	NA
UHGV-0030750_9	Structural annotation	PF21277	NA	NA
UHGV-0030750_11	PHROG	phrog_4105	NA	unknown function
UHGV-0030750_11	eggNOG-mapper	1120998.AUFC01000030_gene2251	NA	NA
UHGV-0030750_12	UniRef90	UniRef90_A0A139DP02	Phage tail fiber protein	NA
UHGV-0030750_12	eggNOG-mapper	443152.MDG893_20534	NA	NA
UHGV-0030750_13	eggNOG-mapper	556269.ACDQ01000006_gene1705	Phage Tail Collar Domain	NA
UHGV-0030750_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0030750_14	PHROG	phrog_18608	NA	unknown function
UHGV-0030750_14	eggNOG-mapper	1294142.CINTURNW_0307	NA	NA
UHGV-0030750_15	PHROG	phrog_1640	tail protein	tail
UHGV-0030750_15	eggNOG-mapper	2754.EH55_08460	NA	NA
UHGV-0030750_16	PHROG	phrog_9880	NA	unknown function
UHGV-0030750_16	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0030750_16	eggNOG-mapper	1200557.JHWV01000001_gene264	NA	NA
UHGV-0030750_16	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0030750_17	PHROG	phrog_10475	endolysin	lysis
UHGV-0030750_17	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0030750_17	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0030750_17	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0030750_17	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0030750_18	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0030750_18	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0030750_18	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0030750_19	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0030750_19	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0030750_20	PHROG	phrog_376	tail protein	tail
UHGV-0030750_20	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0030750_20	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0030750_20	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0030750_20	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0030750_21	PHROG	phrog_394	tail protein	tail
UHGV-0030750_21	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0030750_21	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0030750_21	Structural annotation	PF17212	NA	NA
UHGV-0030750_23	PHROG	phrog_427	NA	unknown function
UHGV-0030750_23	Structural annotation	PF21190	NA	NA
UHGV-0030750_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-0030750_24	UniRef90	UniRef90_A0A345BQX7	Major capsid protein	NA
UHGV-0030750_24	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0030750_24	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0030750_24	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0030750_25	PHROG	phrog_458	protease	other
UHGV-0030750_25	UniRef90	UniRef90_UPI0019E883D9	peptidase	NA
UHGV-0030750_25	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0030750_26	PHROG	phrog_528	NA	unknown function
UHGV-0030750_26	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0030750_27	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0030750_27	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0030750_27	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0030750_27	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0030750_27	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0030750_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0030750_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0030750_29	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0030750_29	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-0030750_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0030750_29	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0030750_29	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0030750_31	UniRef90	UniRef90_UPI001E3C6280	helix-turn-helix domain containing protein	NA
UHGV-0030750_31	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0030750_31	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0030750_33	UniRef90	UniRef90_W1I432	Uncultured bacterium plasmid pRGI00226	NA
UHGV-0030750_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0030750_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0030750_36	UniRef90	UniRef90_A0A7W1JM63	Single-stranded DNA-binding protein	NA
UHGV-0030750_36	eggNOG-mapper	1545701.LACWKB10_1167	Single-strand binding protein family	NA
UHGV-0030750_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0030750_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0030750_36	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0030750_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0030750_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0030750_37	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0030750_37	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0030750_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0030750_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0030750_38	PHROG	phrog_8514	NA	unknown function
UHGV-0030750_42	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0030750_42	PHROG	phrog_923	NA	unknown function
UHGV-0030750_42	UniRef90	UniRef90_A0A412X6I1	Pentapeptide repeat-containing protein	NA
UHGV-0030750_42	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0030750_42	Structural annotation	PF13599, NF011744	NA	NA
UHGV-0030750_43	PHROG	phrog_10714	NA	unknown function
UHGV-0030750_43	Structural annotation	PF21173	NA	NA
UHGV-0030750_45	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0030750_45	UniRef90	UniRef90_UPI000BA6DA7F	HNH endonuclease	NA
UHGV-0030750_45	eggNOG-mapper	935948.KE386495_gene1350	HNH endonuclease	NA
UHGV-0030750_45	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0030750_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0030750_46	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0030750_46	UniRef90	UniRef90_A0A1Q6RAH0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0030750_46	eggNOG-mapper	573061.Clocel_0773	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0030750_46	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0030750_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0030750_46	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0030750_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0030750_46	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0030750_49	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0030750_49	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0030750_49	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0030750_49	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0030750_49	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0030750_49	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0030750_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0030750_49	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0030750_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0030750_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0030750_51	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0030750_51	eggNOG-mapper	1289596.M1NRN6_9CAUD	DNA metabolic process	NA
UHGV-0030750_51	Pfam	PF03837	RecT family	RecT
UHGV-0030750_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0030750_52	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-0030750_52	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0030750_54	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0030750_54	Pfam	PF01476	LysM domain	LysM
UHGV-0030750_54	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0030750_55	Structural annotation	NF041909	NA	NA
UHGV-0030750_56	PHROG	phrog_6058	NA	unknown function
UHGV-0030750_56	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0030750_56	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0030750_61	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0030750_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0030750_61	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0030750_61	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-0030750_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0030750_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0030750_63	KOfam	K14059	int; integrase	NA
UHGV-0030750_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0030750_63	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0030750_63	eggNOG-mapper	1123288.SOV_2c10320	Belongs to the 'phage' integrase family	NA
UHGV-0030750_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0030750_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0030750_63	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0030750_64	Pfam	PF00380	Ribosomal protein S9/S16	Ribosomal_S9
UHGV-0030750_64	COG	COG0103	Ribosomal protein S9	NA