UHGV-0030889

Genome information

Genome length 46,607 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0030889
vOTU ID	vOTU-010684
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_2_2674__NODE_1578_length_46607_cov_21.461831
BioSample	SAMEA4766409
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.15
Jumbo phage	No

Genome content
Genome length	46,607 bps
GC content	45.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.59%
Average CDS length	688.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0030889_1	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0030889_2	PHROG	phrog_16490	NA	unknown function
UHGV-0030889_2	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0030889_3	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0030889_4	PHROG	phrog_21718	NA	unknown function
UHGV-0030889_5	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0030889_5	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0030889_5	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0030889_5	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0030889_8	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0030889_8	Structural annotation	PF21277	NA	NA
UHGV-0030889_10	PHROG	phrog_4105	NA	unknown function
UHGV-0030889_10	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0030889_11	PHROG	phrog_2837	tail protein	tail
UHGV-0030889_11	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0030889_11	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0030889_11	Pfam	PF14301	NA	DUF4376
UHGV-0030889_11	Structural annotation	PF14301	NA	NA
UHGV-0030889_12	Structural annotation	PF16116	NA	NA
UHGV-0030889_13	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0030889_13	PHROG	phrog_21765	NA	unknown function
UHGV-0030889_13	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-0030889_13	COG	COG5434	Polygalacturonase	NA
UHGV-0030889_13	Structural annotation	PF03906	NA	NA
UHGV-0030889_14	PHROG	phrog_9880	NA	unknown function
UHGV-0030889_14	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0030889_14	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0030889_14	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0030889_15	PHROG	phrog_10475	endolysin	lysis
UHGV-0030889_15	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0030889_15	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0030889_15	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0030889_16	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0030889_16	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0030889_16	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0030889_17	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0030889_17	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0030889_18	PHROG	phrog_376	tail protein	tail
UHGV-0030889_18	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0030889_18	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0030889_18	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0030889_19	PHROG	phrog_394	tail protein	tail
UHGV-0030889_19	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0030889_19	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0030889_19	Structural annotation	PF17212	NA	NA
UHGV-0030889_20	PHROG	phrog_427	NA	unknown function
UHGV-0030889_20	Structural annotation	PF21190	NA	NA
UHGV-0030889_21	PHROG	phrog_212	major head protein	head and packaging
UHGV-0030889_21	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0030889_21	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0030889_21	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0030889_21	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0030889_22	PHROG	phrog_458	protease	other
UHGV-0030889_22	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0030889_23	PHROG	phrog_528	NA	unknown function
UHGV-0030889_23	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0030889_24	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0030889_24	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0030889_24	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0030889_24	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0030889_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0030889_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0030889_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0030889_26	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0030889_26	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0030889_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0030889_26	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0030889_26	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0030889_28	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0030889_31	PHROG	phrog_15863	NA	unknown function
UHGV-0030889_31	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-0030889_31	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0030889_31	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0030889_33	Structural annotation	NF009753, COG2608	NA	NA
UHGV-0030889_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0030889_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0030889_35	UniRef90	UniRef90_A0A1Q6RQK6	Single-stranded DNA-binding protein	NA
UHGV-0030889_35	eggNOG-mapper	641112.ACOK01000116_gene2637	Single-strand binding protein family	NA
UHGV-0030889_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0030889_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0030889_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0030889_35	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0030889_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0030889_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0030889_36	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0030889_36	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0030889_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0030889_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0030889_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0030889_38	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0030889_40	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0030889_42	PHROG	phrog_3878	NA	unknown function
UHGV-0030889_44	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0030889_44	UniRef90	UniRef90_UPI0004A0D626	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0030889_44	eggNOG-mapper	1610833.A0A0E3T7R2_9CAUD	methyltransferase activity	NA
UHGV-0030889_44	PADLOC	SspD_00001	SspD	SSP
UHGV-0030889_44	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0030889_45	eggNOG-mapper	1540092.A0A0A0RSY9_9CAUD	transferase activity, transferring alkyl or aryl (other than methyl) groups	NA
UHGV-0030889_47	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0030889_47	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0030889_47	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0030889_47	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0030889_47	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0030889_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0030889_47	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0030889_49	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0030889_49	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0030889_49	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0030889_49	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-0030889_49	Pfam	PF03837	RecT family	RecT
UHGV-0030889_49	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0030889_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0030889_49	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0030889_50	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0030889_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0030889_50	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0030889_51	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0030889_51	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0030889_51	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0030889_51	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0030889_51	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0030889_51	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0030889_51	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0030889_52	PHROG	phrog_14367	NA	unknown function
UHGV-0030889_52	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0030889_52	eggNOG-mapper	626939.HMPREF9443_00995	LysM domain protein	NA
UHGV-0030889_52	Pfam	PF01476	LysM domain	LysM
UHGV-0030889_52	COG	COG1388	LysM repeat	NA
UHGV-0030889_52	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0030889_53	Structural annotation	NF041909	NA	NA
UHGV-0030889_54	PHROG	phrog_6058	NA	unknown function
UHGV-0030889_54	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0030889_54	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0030889_54	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0030889_58	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0030889_58	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0030889_58	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0030889_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0030889_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0030889_58	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0030889_60	KOfam	K14059	int; integrase	NA
UHGV-0030889_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0030889_60	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0030889_60	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-0030889_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0030889_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0030889_60	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0030889_61	Pfam	PF00380	Ribosomal protein S9/S16	Ribosomal_S9
UHGV-0030889_61	COG	COG0103	Ribosomal protein S9	NA