UHGV-0031183

Genome information

Genome length 35,704 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9573

Prediction confidence Confident

Genome information
Genome ID	UHGV-0031183
vOTU ID	vOTU-044122
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_2_2674__NODE_2285_length_35781_cov_20.699389
BioSample	SAMEA4766409
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9573
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.46
Jumbo phage	No

Genome content
Genome length	35,704 bps
GC content	52.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.84%
Average CDS length	634.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031183_1	KOfam	K15519	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	NA
UHGV-0031183_1	PHROG	phrog_761	thymidylate kinase	other
UHGV-0031183_1	UniRef90	UniRef90_A0A2D6MHG0	dNK domain-containing protein	NA
UHGV-0031183_1	eggNOG-mapper	45351.EDO42180	mitochondrial electron transport, NADH to ubiquinone	NA
UHGV-0031183_1	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-0031183_1	COG	COG1428	Deoxyadenosine/deoxycytidine kinase	NA
UHGV-0031183_1	Structural annotation	PF01712, MF_00165, NF005923, COG1428	NA	NA
UHGV-0031183_6	PHROG	phrog_824	NA	unknown function
UHGV-0031183_6	UniRef90	UniRef90_A0A120KLV2	VRR-NUC domain-containing protein	NA
UHGV-0031183_6	eggNOG-mapper	767434.Fraau_0982	VRR-NUC domain	NA
UHGV-0031183_6	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0031183_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0031183_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0031183_7	UniRef90	UniRef90_A0A1J5DQV8	Single-stranded DNA-binding protein	NA
UHGV-0031183_7	eggNOG-mapper	484770.UFO1_2490	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0031183_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0031183_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0031183_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0031183_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0031183_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0031183_8	UniRef90	UniRef90_A0A2R7LBV9	DNA methyltransferase (Fragment)	NA
UHGV-0031183_8	eggNOG-mapper	1287476.HMPREF1651_09165	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0031183_8	COG	COG0338	DNA-adenine methylase	NA
UHGV-0031183_13	PHROG	phrog_1366	NA	unknown function
UHGV-0031183_13	UniRef90	UniRef90_A0A2R4NNU1	AAA domain-containing protein	NA
UHGV-0031183_13	eggNOG-mapper	520999.PROVALCAL_02545	AAA domain	NA
UHGV-0031183_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0031183_13	COG	COG0470	DNA polymerase III, delta prime subunit	NA
UHGV-0031183_24	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0031183_24	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0031183_24	UniRef90	UniRef90_A0A0T7A6I5	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0031183_24	eggNOG-mapper	1227268.HMPREF1552_01557	Phage terminase large subunit (GpA)	NA
UHGV-0031183_24	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0031183_24	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0031183_24	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0031183_24	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0031183_25	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0031183_25	eggNOG-mapper	445972.ANACOL_03358	NA	NA
UHGV-0031183_26	PHROG	phrog_21	portal protein	head and packaging
UHGV-0031183_26	UniRef90	UniRef90_UPI00195E6E0F	phage portal protein	NA
UHGV-0031183_26	eggNOG-mapper	1203606.HMPREF1526_01901	Phage portal protein, lambda family	NA
UHGV-0031183_26	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0031183_26	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0031183_26	COG	COG5511	Phage capsid protein	NA
UHGV-0031183_26	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0031183_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0031183_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0031183_27	UniRef90	UniRef90_A0A519I0M1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0031183_27	eggNOG-mapper	1514668.JOOA01000001_gene207	Belongs to the peptidase S14 family	NA
UHGV-0031183_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0031183_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0031183_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0031183_28	UniRef90	UniRef90_A0A1C6JH61	Phage major capsid protein E	NA
UHGV-0031183_28	eggNOG-mapper	391598.FBBAL38_08809	TIGRFAM Bacterial surface protein 26-residue repeat	NA
UHGV-0031183_28	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0031183_28	COG	COG1470	NA	NA
UHGV-0031183_31	KOfam	K06907	NA	NA
UHGV-0031183_31	PHROG	phrog_23	tail sheath	tail
UHGV-0031183_31	UniRef90	UniRef90_UPI0005D1736E	phage tail sheath family protein	NA
UHGV-0031183_31	eggNOG-mapper	1203606.HMPREF1526_01909	COG3497 Phage tail sheath protein FI	NA
UHGV-0031183_31	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0031183_31	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0031183_31	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0031183_32	UniRef90	UniRef90_A0A358PQ20	Protoporphyrinogen oxidase	NA
UHGV-0031183_32	eggNOG-mapper	1235794.C811_01526	Phage tail tube protein FII	NA
UHGV-0031183_32	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0031183_32	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0031183_32	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0031183_33	UniRef90	UniRef90_A0A447EB34	Inhibitor of Type II CRISPR-Cas system	NA
UHGV-0031183_35	PHROG	phrog_46	tail protein	tail
UHGV-0031183_35	UniRef90	UniRef90_UPI001C8E5305	tail protein X	NA
UHGV-0031183_35	eggNOG-mapper	1285586.H131_21832	Phage Tail Protein X	NA
UHGV-0031183_35	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0031183_35	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0031183_41	PHROG	phrog_6	baseplate protein	tail
UHGV-0031183_41	UniRef90	UniRef90_A0A6N3FBS6	Baseplate J-like protein	NA
UHGV-0031183_41	eggNOG-mapper	1122222.AXWR01000008_gene2440	Baseplate J family protein	NA
UHGV-0031183_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0031183_41	COG	COG3299	NA	NA
UHGV-0031183_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0031183_42	eggNOG-mapper	1235793.C809_02679	Phage tail protein (Tail_P2_I)	NA
UHGV-0031183_42	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0031183_42	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0031183_43	eggNOG-mapper	1408428.JNJP01000025_gene296	NA	NA
UHGV-0031183_44	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0031183_44	UniRef90	UniRef90_UPI00068593FB	phage tail assembly chaperone	NA
UHGV-0031183_44	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0031183_44	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0031183_44	Structural annotation	PF16778	NA	NA
UHGV-0031183_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0031183_48	PHROG	phrog_1794	amidase	lysis
UHGV-0031183_48	UniRef90	UniRef90_A0A1C6J8K0	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-0031183_48	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0031183_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0031183_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0031183_49	PHROG	phrog_89	Rz-like spanin	lysis
UHGV-0031183_51	UniRef90	UniRef90_UPI00164BB471	DNA adenine methylase	NA
UHGV-0031183_51	eggNOG-mapper	1122991.BAIZ01000014_gene1267	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0031183_51	COG	COG0338	DNA-adenine methylase	NA
UHGV-0031183_52	PHROG	phrog_1157	transposase	integration and excision
UHGV-0031183_52	UniRef90	UniRef90_A0A369XR50	IS21 family transposase	NA
UHGV-0031183_52	eggNOG-mapper	555079.Toce_0483	COGs COG4584 Transposase and inactivated derivatives	NA
UHGV-0031183_52	NCBIFam	NF033546.1	IS21 family transposase	NA
UHGV-0031183_52	COG	COG4584	Transposase	NA
UHGV-0031183_52	Structural annotation	PF02914, PF02796, NF033546, COG4584	NA	NA
UHGV-0031183_53	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0031183_53	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0031183_53	UniRef90	UniRef90_G8LVQ0	DNA replication protein	NA
UHGV-0031183_53	eggNOG-mapper	720554.Clocl_1273	DNA replication protein	NA
UHGV-0031183_53	PADLOC	DrmD_00013	DrmD	DISARM
UHGV-0031183_53	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0031183_53	COG	COG1484	DNA replication protein DnaC	NA